Gorai.006G138700 (Gossypium raimondii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gorai.006G138700 T143026_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G138700.1 C2H2 ZF 285 306
Gorai.006G138700.1 C2H2 ZF 305 331

Links

Other C2H2 ZF family TFs
Other Gossypium raimondii TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.827
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.827
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.827
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.827
Pm000471 Prunus mume Pm000471 N 0.827
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.827
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.827
MDP0000403797 Malus domestica MDP0000403797 N 0.827
MDP0000580545 Malus domestica MDP0000580545 N 0.827
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.827
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.821
WIP2 Arabidopsis thaliana AT3G57670 N 0.821
Bo4g111000 Brassica oleracea Bo4g111000 N 0.821
Bo6g073120 Brassica oleracea Bo6g073120 N 0.821
Bo8g092070 Brassica oleracea Bo8g092070 N 0.821
Bra003295 Brassica rapa Bra003295 N 0.821
Bra014612 Brassica rapa Bra014612 N 0.821
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.821
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.821
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.821
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.821
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.821
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.821
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.821
TCM_024788 Theobroma cacao TCM_024788 N 0.821
NTT Vitis vinifera VIT_08s0007g08070 N 0.821
Ca_07269 Cicer arietinum Ca_07269 N 0.821
Cla008187 Citrullus lanatus Cla008187 N 0.821
Pm025853 Prunus mume Pm025853 N 0.821
27810.m000651 Ricinus communis 27810.m000651 N 0.821
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.821
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.821
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.821
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.821
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.821
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.821
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.821
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.821
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.821
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.821
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.821
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.821
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.821
MDP0000601705 Malus domestica MDP0000601705 N 0.821
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.821
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.821
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.821
PK03705.1 Cannabis sativa PK03705.1 N 0.821
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.821
Bra007346 Brassica rapa Bra007346 N 0.819
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.818
30169.m006417 Ricinus communis 30169.m006417 N 0.818
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.818
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.817
TCM_040610 Theobroma cacao TCM_040610 N 0.817
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.817
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.817
cassava34009.m1 Manihot esculenta cassava34009.m1 N 0.812
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.811
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.811
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.811
OBART06G20890 Oryza barthii OBART06G20890 N 0.811
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.811
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.811
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.811
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.811
Ca_21713 Cicer arietinum Ca_21713 N 0.811
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.811
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.811
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.811
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.808
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.808
Cla008675 Citrullus lanatus Cla008675 N 0.803
mgf019910m Mimulus guttatus mgf019910m N 0.803
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.797
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.797
VIT_06s0004g01870 Vitis vinifera VIT_06s0004g01870 N 0.797
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.791
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.791
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.791
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.791
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.791
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.791
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.791
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.791
TCM_005892 Theobroma cacao TCM_005892 N 0.791
30061.m000294 Ricinus communis 30061.m000294 N 0.791
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.791
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N 0.788
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.787
WIP6 Arabidopsis thaliana AT1G13290 N 0.787
BGIOSGA023262 Oryza indica BGIOSGA023262 N 0.787
Bo5g015200 Brassica oleracea Bo5g015200 N 0.787
Bra019822 Brassica rapa Bra019822 N 0.787
BRADI1G36067 Brachypodium distachyon BRADI1G36067 N 0.787
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.787
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.787
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.787
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.787
GRMZM2G435357 Zea mays GRMZM2G435357 N 0.787
GRMZM2G436344 Zea mays GRMZM2G436344 N 0.787
LPERR06G17470 Leersia perrieri LPERR06G17470 N 0.787
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.787
OB06G28740 Oryza brachyantha OB06G28740 N 0.787
OGLUM06G22000 Oryza glumaepatula OGLUM06G22000 N 0.787
ONIVA06G24670 Oryza nivara ONIVA06G24670 N 0.787
OPUNC06G19020 Oryza punctata OPUNC06G19020 N 0.787
ORGLA06G0173600 Oryza glaberrima ORGLA06G0173600 N 0.787
ORUFI06G22350 Oryza rufipogon ORUFI06G22350 N 0.787
OS06G0612300 Oryza sativa OS06G0612300 N 0.787
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.787
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.787
Sb10g024040 Sorghum bicolor Sb10g024040 N 0.787
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.787
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.787
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.787
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.787
Si006616m.g Setaria italica Si006616m.g N 0.787
TCM_011858 Theobroma cacao TCM_011858 N 0.787
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.787
Ca_08435 Cicer arietinum Ca_08435 N 0.787
Ca_24699 Cicer arietinum Ca_24699 N 0.787
Cla002714 Citrullus lanatus Cla002714 N 0.787
Pm029018 Prunus mume Pm029018 N 0.787
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.787
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.787
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.787
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.787
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.787
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.787
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.787
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.787
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.787
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.787
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.787
MDP0000303483 Malus domestica MDP0000303483 N 0.787
Pavir.Db00765 Panicum virgatum Pavir.Db00765 N 0.787
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.787
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.787
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.782
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.782
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.782
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.782
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.782
MDP0000144266 Malus domestica MDP0000144266 N 0.780
MDP0000142494 Malus domestica MDP0000142494 N 0.779
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.778
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.778
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.778
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.778
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.778
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.778
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.778
TCM_034881 Theobroma cacao TCM_034881 N 0.778
TCM_041441 Theobroma cacao TCM_041441 N 0.778
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.778
TT1 Vitis vinifera VIT_18s0001g05860 N 0.778
Pm001374 Prunus mume Pm001374 N 0.778
29908.m006047 Ricinus communis 29908.m006047 N 0.778
30055.m001542 Ricinus communis 30055.m001542 N 0.778
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.778
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.778
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.778
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.778
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.778
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.778
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.778
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N 0.778
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.778
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.778
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.778
MDP0000131949 Malus domestica MDP0000131949 N 0.778
MDP0000300013 Malus domestica MDP0000300013 N 0.778
MDP0000899280 Malus domestica MDP0000899280 N 0.778
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.778
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.778
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.778
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.778
MDP0000573922 Malus domestica MDP0000573922 N 0.775
BGIOSGA030081 Oryza indica BGIOSGA030081 N 0.774
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N 0.774
OBART09G03640 Oryza barthii OBART09G03640 N 0.774
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N 0.774
OMERI09G02890 Oryza meridionalis OMERI09G02890 N 0.774
ONIVA02G14580 Oryza nivara ONIVA02G14580 N 0.774
OPUNC09G03280 Oryza punctata OPUNC09G03280 N 0.774
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N 0.774
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N 0.774
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.774
Ca_16482 Cicer arietinum Ca_16482 N 0.773
BGIOSGA030484 Oryza indica BGIOSGA030484 N 0.772
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N 0.772
GRMZM2G150011 Zea mays GRMZM2G150011 N 0.772
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N 0.772
LPERR09G03450 Leersia perrieri LPERR09G03450 N 0.772
MLOC_54308 Hordeum vulgare MLOC_54308 N 0.772
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N 0.772
OMERI09G03940 Oryza meridionalis OMERI09G03940 N 0.772
ONIVA08G08420 Oryza nivara ONIVA08G08420 N 0.772
OPUNC09G04260 Oryza punctata OPUNC09G04260 N 0.772
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N 0.772
OS09G0307400 Oryza sativa OS09G0307400 N 0.772
Sb02g020840 Sorghum bicolor Sb02g020840 N 0.772
Si030360m.g Setaria italica Si030360m.g N 0.772
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N 0.772
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N 0.772
TRIUR3_30537 Triticum urartu TRIUR3_30537 N 0.772
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.772
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.772
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N 0.772
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.772
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.772
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.768
Cla015481 Citrullus lanatus Cla015481 N 0.767
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.767
mgf022319m Mimulus guttatus mgf022319m N 0.767
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.767
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.767
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.767
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N 0.764
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N 0.763
Bo5g081360 Brassica oleracea Bo5g081360 N 0.761
OBART02G07320 Oryza barthii OBART02G07320 N 0.761
ORGLA02G0068500 Oryza glaberrima ORGLA02G0068500 N 0.761
Cla000184 Citrullus lanatus Cla000184 N 0.759
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.759
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.758
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.758
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.758
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.758
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N 0.758
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.758
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.758
OB08G26650 Oryza brachyantha OB08G26650 N 0.758
OBART08G19670 Oryza barthii OBART08G19670 N 0.758
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.758
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.758
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.758
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.758
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.758
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.758
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.758
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.758
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.758
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.758
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.758
OS08G0504000 Oryza sativa OS08G0504000 N 0.758
OS09G0485600 Oryza sativa OS09G0485600 N 0.758
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.758
Si013819m.g Setaria italica Si013819m.g N 0.758
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.758
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.758
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.758
SapurV1A.1001s0040 Salix purpurea SapurV1A.1001s0040 N 0.758
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.757
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.757