cassava34009.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava34009.m1 T137867_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava34009.m1 C2H2 ZF 259 280
cassava34009.m1 C2H2 ZF 279 308

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

227 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0003s20400 Populus trichocarpa POPTR_0003s20400 N 0.822
30169.m006417 Ricinus communis 30169.m006417 N 0.822
SapurV1A.0009s0540 Salix purpurea SapurV1A.0009s0540 N 0.822
GSMUA_Achr3G11050_001 Musa acuminata GSMUA_Achr3G11050_001 N 0.816
cassava5227.m1 Manihot esculenta cassava5227.m1 N 0.816
GSMUA_AchrUn_randomG22660_001 Musa acuminata GSMUA_AchrUn_randomG22660_001 N 0.812
PGSC0003DMG400013609 Solanum tuberosum PGSC0003DMG400013609 N 0.812
PRUPE_ppa024429mg Prunus persica PRUPE_ppa024429mg N 0.812
Solyc11g062060.1 Solanum lycopersicum Solyc11g062060.1 N 0.812
Pm000471 Prunus mume Pm000471 N 0.812
Ciclev10017716m.g Citrus clementina Ciclev10017716m.g N 0.812
gene20598-v1.0-hybrid Fragaria vesca gene20598-v1.0-hybrid N 0.812
Gorai.006G138700 Gossypium raimondii Gorai.006G138700 N 0.812
Lus10031271.g Linum usitatissimum Lus10031271.g N 0.812
Lus10031838.g Linum usitatissimum Lus10031838.g N 0.812
MDP0000403797 Malus domestica MDP0000403797 N 0.812
MDP0000580545 Malus domestica MDP0000580545 N 0.812
orange1.1g019587m.g Citrus sinensis orange1.1g019587m.g N 0.812
AMTR_s00022p00243980 Amborella trichopoda AMTR_s00022p00243980 N 0.806
WIP2 Arabidopsis thaliana AT3G57670 N 0.806
Bo4g111000 Brassica oleracea Bo4g111000 N 0.806
Bo6g073120 Brassica oleracea Bo6g073120 N 0.806
Bo8g092070 Brassica oleracea Bo8g092070 N 0.806
Bra003295 Brassica rapa Bra003295 N 0.806
Bra014612 Brassica rapa Bra014612 N 0.806
NTT Arabidopsis lyrata fgenesh2_kg.5__2209__AT3G57670.1 N 0.806
GLYMA02G31270 Glycine max GLYMA02G31270 N 0.806
GLYMA19G32430 Glycine max GLYMA19G32430 N 0.806
GSMUA_AchrUn_randomG20320_001 Musa acuminata GSMUA_AchrUn_randomG20320_001 N 0.806
PGSC0003DMG400030271 Solanum tuberosum PGSC0003DMG400030271 N 0.806
POPTR_0016s05310 Populus trichocarpa POPTR_0016s05310 N 0.806
PRUPE_ppa008185mg Prunus persica PRUPE_ppa008185mg N 0.806
TCM_024788 Theobroma cacao TCM_024788 N 0.806
NTT Vitis vinifera VIT_08s0007g08070 N 0.806
Ca_07269 Cicer arietinum Ca_07269 N 0.806
Cla008187 Citrullus lanatus Cla008187 N 0.806
Pm025853 Prunus mume Pm025853 N 0.806
27810.m000651 Ricinus communis 27810.m000651 N 0.806
cassava35956.valid.m1 Manihot esculenta cassava35956.valid.m1 N 0.806
cassava41737.m1 Manihot esculenta cassava41737.m1 N 0.806
Cucsa.242970 Cucumis sativus Cucsa.242970 N 0.806
Cucsa.357260 Cucumis sativus Cucsa.357260 N 0.806
Bostr.20903s0019 Boechera stricta Bostr.20903s0019 N 0.806
Cagra.0210s0004 Capsella grandiflora Cagra.0210s0004 N 0.806
Carubv10017428m.g Capsella rubella Carubv10017428m.g N 0.806
Ciclev10005189m.g Citrus clementina Ciclev10005189m.g N 0.806
Eucgr.A02400 Eucalyptus grandis Eucgr.A02400 N 0.806
evm.TU.supercontig_84.74 Carica papaya evm.TU.supercontig_84.74 N 0.806
gene14361-v1.0-hybrid Fragaria vesca gene14361-v1.0-hybrid N 0.806
Gorai.002G152600 Gossypium raimondii Gorai.002G152600 N 0.806
Gorai.003G089200 Gossypium raimondii Gorai.003G089200 N 0.806
MDP0000601705 Malus domestica MDP0000601705 N 0.806
orange1.1g040794m.g Citrus sinensis orange1.1g040794m.g N 0.806
SapurV1A.0018s0090 Salix purpurea SapurV1A.0018s0090 N 0.806
Thhalv10006035m.g Eutrema salsugineum Thhalv10006035m.g N 0.806
PK03705.1 Cannabis sativa PK03705.1 N 0.806
chr1.CM0318.720.nd Lotus japonicus chr1.CM0318.720.nd N 0.806
Bra007346 Brassica rapa Bra007346 N 0.805
GSMUA_Achr3G11870_001 Musa acuminata GSMUA_Achr3G11870_001 N 0.803
TCM_040610 Theobroma cacao TCM_040610 N 0.803
e_gw1.203.23.1 Physcomitrella patens e_gw1.203.23.1 N 0.803
gw1.359.34.1 Physcomitrella patens gw1.359.34.1 N 0.803
GRMZM2G061545 Zea mays GRMZM2G061545 N 0.796
MLOC_65351 Hordeum vulgare MLOC_65351 N 0.796
OBART06G20890 Oryza barthii OBART06G20890 N 0.796
SELMODRAFT_110681 Selaginella moellendorffii SELMODRAFT_110681 N 0.796
SELMODRAFT_128378 Selaginella moellendorffii SELMODRAFT_128378 N 0.796
Traes_7AL_1070DBD71 Triticum aestivum Traes_7AL_1070DBD71 N 0.796
TRIUR3_23735 Triticum urartu TRIUR3_23735 N 0.796
Ca_21713 Cicer arietinum Ca_21713 N 0.796
Eucgr.J00788 Eucalyptus grandis Eucgr.J00788 N 0.796
Gorai.013G250800 Gossypium raimondii Gorai.013G250800 N 0.796
GSMUA_Achr6G03470_001 Musa acuminata GSMUA_Achr6G03470_001 N 0.792
Cla008675 Citrullus lanatus Cla008675 N 0.788
mgf019910m Mimulus guttatus mgf019910m N 0.788
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.786
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.786
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.786
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.786
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.786
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.782
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.782
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.782
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.782
PGSC0003DMG400046144 Solanum tuberosum PGSC0003DMG400046144 N 0.782
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.782
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.782
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.782
Solyc05g009770.1 Solanum lycopersicum Solyc05g009770.1 N 0.782
TCM_041441 Theobroma cacao TCM_041441 N 0.782
VIT_06s0004g01870 Vitis vinifera VIT_06s0004g01870 N 0.782
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.782
Ca_16482 Cicer arietinum Ca_16482 N 0.782
Pm001374 Prunus mume Pm001374 N 0.782
30055.m001542 Ricinus communis 30055.m001542 N 0.782
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.782
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.782
Ciclev10033535m.g Citrus clementina Ciclev10033535m.g N 0.782
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.782
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.782
gene03867-v1.0-hybrid Fragaria vesca gene03867-v1.0-hybrid N 0.782
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.782
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.782
MDP0000131949 Malus domestica MDP0000131949 N 0.782
MDP0000300013 Malus domestica MDP0000300013 N 0.782
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.782
orange1.1g046329m.g Citrus sinensis orange1.1g046329m.g N 0.782
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.782
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N 0.779
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.777
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.777
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.777
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.777
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.777
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.777
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.777
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.777
TCM_005892 Theobroma cacao TCM_005892 N 0.777
30061.m000294 Ricinus communis 30061.m000294 N 0.777
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.777
BGIOSGA030484 Oryza indica BGIOSGA030484 N 0.776
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N 0.776
GRMZM2G150011 Zea mays GRMZM2G150011 N 0.776
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N 0.776
LPERR09G03450 Leersia perrieri LPERR09G03450 N 0.776
MLOC_54308 Hordeum vulgare MLOC_54308 N 0.776
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N 0.776
OMERI09G03940 Oryza meridionalis OMERI09G03940 N 0.776
ONIVA08G08420 Oryza nivara ONIVA08G08420 N 0.776
OPUNC09G04260 Oryza punctata OPUNC09G04260 N 0.776
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N 0.776
OS09G0307400 Oryza sativa OS09G0307400 N 0.776
Sb02g020840 Sorghum bicolor Sb02g020840 N 0.776
Si030360m.g Setaria italica Si030360m.g N 0.776
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N 0.776
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N 0.776
TRIUR3_30537 Triticum urartu TRIUR3_30537 N 0.776
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.776
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.776
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N 0.776
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.776
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N 0.773
WIP6 Arabidopsis thaliana AT1G13290 N 0.773
BGIOSGA023262 Oryza indica BGIOSGA023262 N 0.773
Bo5g015200 Brassica oleracea Bo5g015200 N 0.773
Bra019822 Brassica rapa Bra019822 N 0.773
BRADI1G36067 Brachypodium distachyon BRADI1G36067 N 0.773
GLYMA01G22120 Glycine max GLYMA01G22120 N 0.773
GLYMA02G10970 Glycine max GLYMA02G10970 N 0.773
GLYMA10G34770 Glycine max GLYMA10G34770 N 0.773
GLYMA20G32750 Glycine max GLYMA20G32750 N 0.773
GRMZM2G435357 Zea mays GRMZM2G435357 N 0.773
GRMZM2G436344 Zea mays GRMZM2G436344 N 0.773
LPERR06G17470 Leersia perrieri LPERR06G17470 N 0.773
MTR_1g093095 Medicago truncatula MTR_1g093095 N 0.773
OB06G28740 Oryza brachyantha OB06G28740 N 0.773
OGLUM06G22000 Oryza glumaepatula OGLUM06G22000 N 0.773
ONIVA06G24670 Oryza nivara ONIVA06G24670 N 0.773
OPUNC06G19020 Oryza punctata OPUNC06G19020 N 0.773
ORGLA06G0173600 Oryza glaberrima ORGLA06G0173600 N 0.773
ORUFI06G22350 Oryza rufipogon ORUFI06G22350 N 0.773
OS06G0612300 Oryza sativa OS06G0612300 N 0.773
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.773
POPTR_0010s13910 Populus trichocarpa POPTR_0010s13910 N 0.773
PRUPE_ppa020013m2g Prunus persica PRUPE_ppa020013m2g N 0.773
Sb10g024040 Sorghum bicolor Sb10g024040 N 0.773
SELMODRAFT_36986 Selaginella moellendorffii SELMODRAFT_36986 N 0.773
SELMODRAFT_36987 Selaginella moellendorffii SELMODRAFT_36987 N 0.773
SELMODRAFT_57106 Selaginella moellendorffii SELMODRAFT_57106 N 0.773
SELMODRAFT_57114 Selaginella moellendorffii SELMODRAFT_57114 N 0.773
Si006616m.g Setaria italica Si006616m.g N 0.773
TCM_011858 Theobroma cacao TCM_011858 N 0.773
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.773
Ca_08435 Cicer arietinum Ca_08435 N 0.773
Ca_24699 Cicer arietinum Ca_24699 N 0.773
Cla002714 Citrullus lanatus Cla002714 N 0.773
Pm029018 Prunus mume Pm029018 N 0.773
cassava46219.m1 Manihot esculenta cassava46219.m1 N 0.773
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.773
Aquca_026_00228 Aquilegia coerulea Aquca_026_00228 N 0.773
Bostr.13671s0117 Boechera stricta Bostr.13671s0117 N 0.773
Cagra.3501s0170 Capsella grandiflora Cagra.3501s0170 N 0.773
Carubv10012013m.g Capsella rubella Carubv10012013m.g N 0.773
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N 0.773
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.773
Gorai.013G080100 Gossypium raimondii Gorai.013G080100 N 0.773
Lus10021700.g Linum usitatissimum Lus10021700.g N 0.773
Lus10035044.g Linum usitatissimum Lus10035044.g N 0.773
MDP0000303483 Malus domestica MDP0000303483 N 0.773
MDP0000899280 Malus domestica MDP0000899280 N 0.773
Pavir.Db00765 Panicum virgatum Pavir.Db00765 N 0.773
Thhalv10009489m.g Eutrema salsugineum Thhalv10009489m.g N 0.773
chr2.CM1731.90.nc Lotus japonicus chr2.CM1731.90.nc N 0.773
MDP0000144266 Malus domestica MDP0000144266 N 0.771
MDP0000142494 Malus domestica MDP0000142494 N 0.769
GSMUA_Achr5G26210_001 Musa acuminata GSMUA_Achr5G26210_001 N 0.768
SapurV1A.0445s0120 Salix purpurea SapurV1A.0445s0120 N 0.767
SapurV1A.0445s0140 Salix purpurea SapurV1A.0445s0140 N 0.767
TCM_034881 Theobroma cacao TCM_034881 N 0.763
TT1 Vitis vinifera VIT_18s0001g05860 N 0.763
Cla000184 Citrullus lanatus Cla000184 N 0.763
29908.m006047 Ricinus communis 29908.m006047 N 0.763
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.763
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.763
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.763
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.763
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.763
GSMUA_Achr11G18950_001 Musa acuminata GSMUA_Achr11G18950_001 N 0.762
MDP0000573922 Malus domestica MDP0000573922 N 0.761
Bo5g008880 Brassica oleracea Bo5g008880 N 0.760
Bo8g112550 Brassica oleracea Bo8g112550 N 0.760
Bra018638 Brassica rapa Bra018638 N 0.760
Bra031621 Brassica rapa Bra031621 N 0.760
BGIOSGA030081 Oryza indica BGIOSGA030081 N 0.759
OBART09G03640 Oryza barthii OBART09G03640 N 0.759
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N 0.759
OMERI09G02890 Oryza meridionalis OMERI09G02890 N 0.759
ONIVA02G14580 Oryza nivara ONIVA02G14580 N 0.759
OPUNC09G03280 Oryza punctata OPUNC09G03280 N 0.759
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N 0.759
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N 0.759
Ca_07051 Cicer arietinum Ca_07051 N 0.759
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.759
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.759
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.759
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.759
SapurV1A.0027s0280 Salix purpurea SapurV1A.0027s0280 N 0.757