Alligator_sinensis_CCG008208.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG008208.1 T133220_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ovol2
M08993_2.00 		Mus musculus
HCCGTTAN
NTAACGGD		 Misc
Kulakovskiy et al.(2013)
OVOL2_MOUSE.H11MO.0.C 		0.812 0.935
OVOL2
M00235_2.00 		Homo sapiens
NCCGYTANNN
NNNTARCGGN		 PBM
Barrera et al.(2016)
OVOL2_REF 		0.797 0.924
OVOL2
M04445_2.00 		Homo sapiens
NNHCCGYTANNHN
NDNNTARCGGDNN		 SELEX
Yin et al.(2017)
OVOL2_eDBD_HT-SELEX 		0.797 0.924
OVOL2
M04447_2.00 		Homo sapiens
DDWCCGTTABNHN
NDNVTAACGGWHH		 SELEX
Yin et al.(2017)
OVOL2_FL_HT-SELEX 		0.797 0.924
OVOL2
M10207_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MOVOB_01 		0.797 0.924
OVOL2
M04446_2.00 		Homo sapiens
NNWCCGTTANNHN
NDNNTAACGGWNN		 SELEX
Yin et al.(2017)
OVOL2_eDBD_Methyl-HT-SELEX 		0.797 0.924
OVOL2
M04448_2.00 		Homo sapiens
DDWCCGTTABNHN
NDNVTAACGGWHH		 SELEX
Yin et al.(2017)
OVOL2_FL_Methyl-HT-SELEX 		0.797 0.924
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG008208.1 C2H2 ZF 114 136
Alligator_sinensis_CCG008208.1 C2H2 ZF 140 164
Alligator_sinensis_CCG008208.1 C2H2 ZF 170 193
Alligator_sinensis_CCG008208.1 C2H2 ZF 209 232

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

52 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R006310 Calypte anna Aan_R006310 I 0.812
Afo_R007843 Aptenodytes forsteri Afo_R007843 I 0.812
Brh_R002739 Buceros rhinoceros Brh_R002739 I 0.812
Cmyd_10010114 Chelonia mydas Cmyd_10010114 I 0.822
ENSAMEG00000005266 Ailuropoda melanoleuca ENSAMEG00000005266 I 0.803
ENSAPLG00000016199 Anas platyrhynchos ENSAPLG00000016199 I 0.797
ENSBTAP00000011067-D1 Bos grunniens ENSBTAP00000011067-D1 I 0.795
ENSCPOG00000007912 Cavia porcellus ENSCPOG00000007912 I 0.799
ENSCSAG00000011547 Chlorocebus sabaeus ENSCSAG00000011547 I 0.797
ENSFALG00000007594 Ficedula albicollis ENSFALG00000007594 I 0.807
ENSMEUG00000011922 Macropus eugenii ENSMEUG00000011922 I 0.776
ENSMGAG00000006770 Meleagris gallopavo ENSMGAG00000006770 I 0.807
ENSMICG00000017455 Microcebus murinus ENSMICG00000017455 I 0.797
ENSMLUG00000026760 Myotis lucifugus ENSMLUG00000026760 I 0.797
ENSMMUG00000021621 Macaca mulatta ENSMMUG00000021621 I 0.797
ENSMPUG00000001295 Mustela putorius furo ENSMPUG00000001295 I 0.803
ENSNLEG00000009741 Nomascus leucogenys ENSNLEG00000009741 I 0.797
ENSOANG00000001250 Ornithorhynchus anatinus ENSOANG00000001250 I 0.822
ENSOARG00000018244 Ovis aries ENSOARG00000018244 I 0.795
ENSP00000278780 Macaca fascicularis ENSP00000278780 I 0.797
ENSPANG00000025538 Papio anubis ENSPANG00000025538 I 0.797
ENSPPYG00000010732 Pongo abelii ENSPPYG00000010732 I 0.797
ENSPSIG00000006768 Pelodiscus sinensis ENSPSIG00000006768 I 0.822
ENSSARG00000006563 Sorex araneus ENSSARG00000006563 I 0.799
ENSSHAG00000018466 Sarcophilus harrisii ENSSHAG00000018466 I 0.805
ENSSTOG00000024979 Ictidomys tridecemlineatus ENSSTOG00000024979 I 0.800
Myotis_brandtii_Ovol2_10029083 Myotis brandtii Myotis_brandtii_Ovol2_10029083 I 0.797
Ogr08372 Ophisaurus gracilis Ogr08372 I 0.789
OVOL2 Echinops telfairi ENSETEG00000006907 I 0.794
OVOL2 Taeniopygia guttata ENSTGUG00000005909 I 0.807
OVOL2 Tursiops truncatus ENSTTRG00000016430 I 0.795
Ovol2 Rattus norvegicus ENSRNOG00000006850 I 0.812
OVOL2 Equus caballus ENSECAG00000007899 I 0.797
Ovol2 Dipodomys ordii ENSDORG00000016697 I 0.800
OVOL2 Canis familiaris ENSCAFG00000005453 I 0.815
OVOL2 Bos taurus ENSBTAG00000008410 I 0.795
ovol2 Xenopus tropicalis XB-GENE-854193 I 0.802
OVOL2 Loxodonta africana ENSLAFG00000010597 I 0.797
OVOL2 Pteropus vampyrus ENSPVAG00000001140 I 0.800
OVOL2 Pan troglodytes ENSPTRG00000013280 I 0.797
OVOL2 Ochotona princeps ENSOPRG00000015054 I 0.790
OVOL2 Otolemur garnettii ENSOGAG00000030325 I 0.797
OVOL2 Oryctolagus cuniculus ENSOCUG00000012116 I 0.797
OVOL2 Anolis carolinensis ENSACAG00000014216 I 0.789
OVOL2 Felis catus ENSFCAG00000027530 I 0.803
OVOL2 Homo sapiens ENSG00000125850 D 0.797
Ovol2 Mus musculus ENSMUSG00000037279 D 0.812
OVOL2 Gallus gallus ENSGALG00000008702 I 0.807
OVOL2 Monodelphis domestica ENSMODG00000005504 I 0.805
OVOL2 Gorilla gorilla ENSGGOG00000024444 I 0.797
Pvit_03654 Pogona vitticeps Pvit_03654 I 0.775
Tal_R010801 Tyto alba Tal_R010801 I 0.812