CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG018668.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG018668.1
T133406_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ZNF143
M02899_2.00
Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR
SELEX
Jolma et al.(2013)
ZNF143_1
0.826
0.988
ZNF143
M07931_2.00
Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY
ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford
0.826
0.988
ZNF143
M08910_2.00
Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A
0.826
0.988
ZNF143
M09510_2.00
Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN
Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600
0.826
0.988
ZNF143
M10247_2.00
Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN
Transfac
Matys et al.(2006)
V$STAF_01
0.826
0.988
ZNF143
M10248_2.00
Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK
Transfac
Matys et al.(2006)
V$STAF_02
0.826
0.988
ZNF143
M10249_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$STAF_Q4_01
0.826
0.988
Zfp143
M09010_2.00
Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY
Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A
0.824
0.981
ZNF76
M04398_2.00
Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN
SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX
0.765
0.839
ZNF76
M08278_2.00
Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV
ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE
0.765
0.839
ZNF76
M08856_2.00
Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT
Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C
0.765
0.839
ZNF76
M04399_2.00
Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN
SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX
0.765
0.839
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG018668.1
C2H2 ZF
236
260
FRCEYDGCGKLYTTAHHLKVHERSH
Alligator_sinensis_CCG018668.1
C2H2 ZF
266
290
YQCEHPGCGKAFATGYGLKSHVRTH
Alligator_sinensis_CCG018668.1
C2H2 ZF
296
320
YRCTEENCTKSFKTSGDLQKHIRTH
Alligator_sinensis_CCG018668.1
C2H2 ZF
326
350
FKCPFEGCGRSFTTSNIRKVHIRTH
Alligator_sinensis_CCG018668.1
C2H2 ZF
356
380
YYCTEPGCGRAFASATNYKNHVRIH
Alligator_sinensis_CCG018668.1
C2H2 ZF
386
410
YVCTVPGCDKRFTEYSSLYKHHVVH
Alligator_sinensis_CCG018668.1
C2H2 ZF
416
439
YNCNHCGKTYKQISTLAMHKRTAH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
113 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAH73068
Xenopus laevis
AAH73068
I
0.821
Aan_R006576
Calypte anna
Aan_R006576
I
0.826
Afo_R002092
Aptenodytes forsteri
Afo_R002092
I
0.766
Afo_R014591
Aptenodytes forsteri
Afo_R014591
I
0.826
Alligator_sinensis_CCG020455.1
Alligator sinensis
Alligator_sinensis_CCG020455.1
I
0.766
BGLB001048
Biomphalaria glabrata
BGLB001048
I
0.775
Brh_R005520
Buceros rhinoceros
Brh_R005520
I
0.826
Cmyd_10011173
Chelonia mydas
Cmyd_10011173
I
0.766
ENSAMEG00000000752
Ailuropoda melanoleuca
ENSAMEG00000000752
I
0.765
ENSAMEG00000003872
Ailuropoda melanoleuca
ENSAMEG00000003872
I
0.826
ENSAMXG00000003833
Astyanax mexicanus
ENSAMXG00000003833
I
0.812
ENSAMXG00000008869
Astyanax mexicanus
ENSAMXG00000008869
I
0.766
ENSAPLG00000002385
Anas platyrhynchos
ENSAPLG00000002385
I
0.826
ENSBTAP00000008112-D1
Bos grunniens
ENSBTAP00000008112-D1
I
0.765
ENSCSAG00000004520
Chlorocebus sabaeus
ENSCSAG00000004520
I
0.820
ENSCSAG00000009955
Chlorocebus sabaeus
ENSCSAG00000009955
I
0.765
ENSFALG00000000985
Ficedula albicollis
ENSFALG00000000985
I
0.826
ENSFALG00000003698
Ficedula albicollis
ENSFALG00000003698
I
0.766
ENSGMOG00000001888
Gadus morhua
ENSGMOG00000001888
I
0.816
ENSLACG00000017669
Latimeria chalumnae
ENSLACG00000017669
I
0.814
ENSLOCG00000003619
Lepisosteus oculatus
ENSLOCG00000003619
I
0.821
ENSLOCG00000011655
Lepisosteus oculatus
ENSLOCG00000011655
I
0.779
ENSMEUG00000003014
Macropus eugenii
ENSMEUG00000003014
I
0.824
ENSMPUG00000003522
Mustela putorius furo
ENSMPUG00000003522
I
0.765
ENSMPUG00000012796
Mustela putorius furo
ENSMPUG00000012796
I
0.826
ENSOARG00000012477
Ovis aries
ENSOARG00000012477
I
0.823
ENSONIG00000015524
Oreochromis niloticus
ENSONIG00000015524
I
0.812
ENSOPRG00000009136
Ochotona princeps
ENSOPRG00000009136
I
0.765
ENSP00000363064
Macaca fascicularis
ENSP00000363064
I
0.765
ENSP00000379847
Macaca fascicularis
ENSP00000379847
I
0.826
ENSP00000379847-D1
Bos grunniens
ENSP00000379847-D1
I
0.823
ENSPANG00000002501
Papio anubis
ENSPANG00000002501
I
0.826
ENSPANG00000021154
Papio anubis
ENSPANG00000021154
I
0.765
ENSPFOG00000008911
Poecilia formosa
ENSPFOG00000008911
I
0.816
ENSPPYG00000003495
Pongo abelii
ENSPPYG00000003495
I
0.826
ENSPPYG00000016525
Pongo abelii
ENSPPYG00000016525
I
0.765
ENSPSIG00000005652
Pelodiscus sinensis
ENSPSIG00000005652
I
0.766
ENSPSIG00000009683
Pelodiscus sinensis
ENSPSIG00000009683
I
0.827
ENSSHAG00000009934
Sarcophilus harrisii
ENSSHAG00000009934
I
0.765
ENSSTOG00000000256
Ictidomys tridecemlineatus
ENSSTOG00000000256
I
0.765
ENSSTOG00000009647
Ictidomys tridecemlineatus
ENSSTOG00000009647
I
0.817
ENSTGUG00000008153
Taeniopygia guttata
ENSTGUG00000008153
I
0.826
ENSTSYG00000004324
Tarsius syrichta
ENSTSYG00000004324
I
0.826
ENSXMAG00000005152
Xiphophorus maculatus
ENSXMAG00000005152
I
0.816
estExt_fgenesh2_pg.C_1970081
Branchiostoma floridae
estExt_fgenesh2_pg.C_1970081
I
0.761
Gfo_R002960
Geospiza fortis
Gfo_R002960
I
0.766
Gfo_R011843
Geospiza fortis
Gfo_R011843
I
0.826
LotgiG222832
Lottia gigantea
LotgiG222832
I
0.769
Myotis_brandtii_ZNF143_10021171
Myotis brandtii
Myotis_brandtii_ZNF143_10021171
I
0.815
Myotis_brandtii_ZNF76_10017771
Myotis brandtii
Myotis_brandtii_ZNF76_10017771
I
0.765
Ocbimv22038914m.g
Octopus bimaculoides
Ocbimv22038914m.g
I
0.772
Ogr18895
Ophisaurus gracilis
Ogr18895
I
0.820
Pvit_03784
Pogona vitticeps
Pvit_03784
I
0.817
Sakowv30036637m.g
Saccoglossus kowalevskii
Sakowv30036637m.g
I
0.779
Sakowv30044960m.g
Saccoglossus kowalevskii
Sakowv30044960m.g
I
0.779
SMAR015659
Strigamia maritima
SMAR015659
I
0.769
Tal_R001092
Tyto alba
Tal_R001092
I
0.826
Tal_R002540
Tyto alba
Tal_R002540
I
0.765
Zfp143
Mus musculus
ENSMUSG00000061079
D
0.824
Zfp143
Rattus norvegicus
ENSRNOG00000010087
I
0.824
Zfp523
Mus musculus
ENSMUSG00000024220
I
0.765
Zfp523
Rattus norvegicus
ENSRNOG00000000501
I
0.765
ZNF143
Anolis carolinensis
ENSACAG00000009338
I
0.824
ZNF143
Canis familiaris
ENSCAFG00000007373
I
0.826
ZNF143
Callithrix jacchus
ENSCJAG00000011327
I
0.826
ZNF143
Cavia porcellus
ENSCPOG00000003109
I
0.826
ZNF143
Equus caballus
ENSECAG00000018889
I
0.826
ZNF143
Erinaceus europaeus
ENSEEUG00000000955
I
0.825
ZNF143
Felis catus
ENSFCAG00000002342
I
0.826
ZNF143
Homo sapiens
ENSG00000166478
D
0.826
ZNF143
Gallus gallus
ENSGALG00000005787
I
0.826
ZNF143
Loxodonta africana
ENSLAFG00000004487
I
0.826
ZNF143
Meleagris gallopavo
ENSMGAG00000006206
I
0.826
ZNF143
Microcebus murinus
ENSMICG00000004353
I
0.826
ZNF143
Myotis lucifugus
ENSMLUG00000000213
I
0.824
ZNF143
Macaca mulatta
ENSMMUG00000008758
I
0.826
ZNF143
Monodelphis domestica
ENSMODG00000007909
I
0.824
ZNF143
Ornithorhynchus anatinus
ENSOANG00000005853
I
0.821
ZNF143
Oryctolagus cuniculus
ENSOCUG00000005226
I
0.824
ZNF143
Otolemur garnettii
ENSOGAG00000011518
I
0.826
ZNF143
Ochotona princeps
ENSOPRG00000005466
I
0.824
ZNF143
Pan troglodytes
ENSPTRG00000003349
I
0.826
ZNF143
Sorex araneus
ENSSARG00000007780
I
0.824
znf143
Takifugu rubripes
ENSTRUG00000009324
I
0.814
ZNF143
Tursiops truncatus
ENSTTRG00000015353
I
0.823
znf143
Xenopus tropicalis
XB-GENE-1012504
I
0.821
znf143.S
Xenopus laevis
XB-GENE-1012509
I
0.820
znf143b
Danio rerio
ENSDARG00000041581
I
0.814
znf143b
Gasterosteus aculeatus
ENSGACG00000009776
I
0.812
znf143b
Oryzias latipes
ENSORLG00000001130
I
0.806
znf143b
Tetraodon nigroviridis
ENSTNIG00000013739
I
0.814
ZNF76
Bos taurus
ENSBTAG00000006170
I
0.765
ZNF76
Canis familiaris
ENSCAFG00000001304
I
0.765
ZNF76
Choloepus hoffmanni
ENSCHOG00000003197
I
0.765
ZNF76
Callithrix jacchus
ENSCJAG00000015519
I
0.765
ZNF76
Cavia porcellus
ENSCPOG00000007381
I
0.771
znf76
Danio rerio
ENSDARG00000013279
I
0.775
ZNF76
Dasypus novemcinctus
ENSDNOG00000015856
I
0.765
ZNF76
Equus caballus
ENSECAG00000014843
I
0.765
ZNF76
Felis catus
ENSFCAG00000005893
I
0.765
ZNF76
Homo sapiens
ENSG00000065029
D
0.765
ZNF76
Gorilla gorilla
ENSGGOG00000014188
I
0.765
ZNF76
Loxodonta africana
ENSLAFG00000026071
I
0.765
ZNF76
Myotis lucifugus
ENSMLUG00000008610
I
0.765
ZNF76
Macaca mulatta
ENSMMUG00000023559
I
0.765
ZNF76
Monodelphis domestica
ENSMODG00000013806
I
0.765
ZNF76
Oryctolagus cuniculus
ENSOCUG00000015630
I
0.765
ZNF76
Otolemur garnettii
ENSOGAG00000002935
I
0.766
ZNF76
Pan troglodytes
ENSPTRG00000018080
I
0.765
ZNF76
Pteropus vampyrus
ENSPVAG00000008041
I
0.765
ZNF76
Sus scrofa
ENSSSCG00000001537
I
0.765
ZNF76
Taeniopygia guttata
ENSTGUG00000001745
I
0.766
ZNF76
Tursiops truncatus
ENSTTRG00000009380
I
0.765