Alligator_sinensis_CCG020374.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG020374.1 T133440_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Osr2
M00132_2.00 		Mus musculus
NGCTWCYGNN
NNCRGWAGCN		 PBM
Badis et al.(2009)
Osr2_1727 		0.827 1.000
Osr1
M00144_2.00 		Mus musculus
NVCTHCYNN
NNRGDAGBN		 PBM
Badis et al.(2009)
Osr1_3033 		0.811 0.986
Osr1
M01174_2.00 		Mus musculus
GCTACYGT
ACRGTAGC		 PBM
Lambert et al.(2019)
pTH5339 		0.811 0.986
OSR1
M04477_2.00 		Homo sapiens
NGCTACYGTD
HACRGTAGCN		 SELEX
Yin et al.(2017)
OSR1_eDBD_HT-SELEX 		0.811 0.986
OSR1
M04478_2.00 		Homo sapiens
NGCTACYGTD
HACRGTAGCN		 SELEX
Yin et al.(2017)
OSR1_eDBD_Methyl-HT-SELEX 		0.811 0.986
odd-2
M00618_2.00 		Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN		 PBM
Narasimhan et al.(2015)
pTH9150 		0.770 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG020374.1 C2H2 ZF 172 194
Alligator_sinensis_CCG020374.1 C2H2 ZF 200 222
Alligator_sinensis_CCG020374.1 C2H2 ZF 228 250

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R015359 Calypte anna Aan_R015359 I 0.811
ACAC_0000529401 Angiostrongylus cantonensis ACAC_0000529401 I 0.770
ACOC_0001130401 Angiostrongylus costaricensis ACOC_0001130401 I 0.770
Afo_R001755 Aptenodytes forsteri Afo_R001755 I 0.811
ANCCAN_29852 Ancylostoma caninum ANCCAN_29852 I 0.763
ANCCEY_10108 Ancylostoma ceylanicum ANCCEY_10108 I 0.763
ANCDUO_21978 Ancylostoma duodenale ANCDUO_21978 I 0.763
ASU_07002 Ascaris suum ASU_07002 I 0.771
Bm9236 Brugia malayi Bm9236 I 0.767
Brh_R010228 Buceros rhinoceros Brh_R010228 I 0.811
BTMF_0000075201 Brugia timori BTMF_0000075201 I 0.767
CAJ80803 Xenopus laevis CAJ80803 I 0.811
CBG14844 Caenorhabditis briggsae CBG14844 I 0.766
CBN15373 Caenorhabditis brenneri CBN15373 I 0.770
CGI_10012022 Crassostrea gigas CGI_10012022 I 0.800
CJA04579 Caenorhabditis japonica CJA04579 I 0.770
Cmyd_10011319 Chelonia mydas Cmyd_10011319 I 0.811
CRE00192 Caenorhabditis remanei CRE00192 I 0.766
CRE25083 Caenorhabditis remanei CRE25083 I 0.756
DICVIV_08037 Dictyocaulus viviparus DICVIV_08037 I 0.763
DME_0000745901 Dracunculus medinensis DME_0000745901 I 0.771
EEL_0000443001 Elaeophora elaphi EEL_0000443001 I 0.771
ENSACAG00000016280 Anolis carolinensis ENSACAG00000016280 I 0.827
ENSAMXG00000014504 Astyanax mexicanus ENSAMXG00000014504 I 0.827
ENSAMXG00000021239 Astyanax mexicanus ENSAMXG00000021239 I 0.811
ENSAPLG00000007971 Anas platyrhynchos ENSAPLG00000007971 I 0.811
ENSBTAG00000013213 Bos taurus ENSBTAG00000013213 I 0.827
ENSBTAP00000010670-D1 Bos grunniens ENSBTAP00000010670-D1 I 0.811
ENSBTAP00000017584-D1 Bos grunniens ENSBTAP00000017584-D1 I 0.827
ENSCING00000006616 Ciona intestinalis ENSCING00000006616 I 0.804
ENSCPOG00000020572 Cavia porcellus ENSCPOG00000020572 I 0.827
ENSCSAG00000008012 Chlorocebus sabaeus ENSCSAG00000008012 I 0.811
ENSCSAG00000012312 Chlorocebus sabaeus ENSCSAG00000012312 I 0.827
ENSFALG00000001785 Ficedula albicollis ENSFALG00000001785 I 0.811
ENSFCAG00000014220 Felis catus ENSFCAG00000014220 I 0.827
ENSGMOG00000016368 Gadus morhua ENSGMOG00000016368 I 0.827
ENSLACG00000005856 Latimeria chalumnae ENSLACG00000005856 I 0.811
ENSLAFG00000009420 Loxodonta africana ENSLAFG00000009420 I 0.827
ENSLOCG00000009790 Lepisosteus oculatus ENSLOCG00000009790 I 0.827
ENSLOCG00000017185 Lepisosteus oculatus ENSLOCG00000017185 I 0.811
ENSLOCG00000017186 Lepisosteus oculatus ENSLOCG00000017186 I 0.811
ENSMEUG00000016111 Macropus eugenii ENSMEUG00000016111 I 0.811
ENSMLUG00000013412 Myotis lucifugus ENSMLUG00000013412 I 0.827
ENSMPUG00000013697 Mustela putorius furo ENSMPUG00000013697 I 0.811
ENSMPUG00000015246 Mustela putorius furo ENSMPUG00000015246 I 0.827
ENSNLEG00000002004 Nomascus leucogenys ENSNLEG00000002004 I 0.811
ENSOARG00000016880 Ovis aries ENSOARG00000016880 I 0.811
ENSOCUG00000022383 Oryctolagus cuniculus ENSOCUG00000022383 I 0.827
ENSONIG00000011343 Oreochromis niloticus ENSONIG00000011343 I 0.811
ENSP00000272223 Macaca fascicularis ENSP00000272223 I 0.811
ENSPANG00000012764 Papio anubis ENSPANG00000012764 I 0.827
ENSPANG00000025998 Papio anubis ENSPANG00000025998 I 0.811
ENSPFOG00000006861 Poecilia formosa ENSPFOG00000006861 I 0.811
ENSPFOG00000012273 Poecilia formosa ENSPFOG00000012273 I 0.827
ENSPMAG00000001278 Petromyzon marinus ENSPMAG00000001278 I 0.788
ENSPPYG00000012624 Pongo abelii ENSPPYG00000012624 I 0.811
ENSPSIG00000011751 Pelodiscus sinensis ENSPSIG00000011751 I 0.805
ENSPSIG00000011787 Pelodiscus sinensis ENSPSIG00000011787 I 0.827
ENSSHAG00000007793 Sarcophilus harrisii ENSSHAG00000007793 I 0.827
ENSSHAG00000010395 Sarcophilus harrisii ENSSHAG00000010395 I 0.811
ENSSSCG00000027549 Sus scrofa ENSSSCG00000027549 I 0.811
ENSSTOG00000015454 Ictidomys tridecemlineatus ENSSTOG00000015454 I 0.811
ENSSTOG00000021263 Ictidomys tridecemlineatus ENSSTOG00000021263 I 0.827
ENSTGUG00000012027 Taeniopygia guttata ENSTGUG00000012027 I 0.827
ENSXMAG00000002498 Xiphophorus maculatus ENSXMAG00000002498 I 0.827
ENSXMAG00000015661 Xiphophorus maculatus ENSXMAG00000015661 I 0.811
EVEC_0001078501 Enterobius vermicularis EVEC_0001078501 I 0.759
Gfo_R006005 Geospiza fortis Gfo_R006005 I 0.827
Gfo_R015235 Geospiza fortis Gfo_R015235 I 0.811
GPUH_0001513701 Gongylonema pulchrum GPUH_0001513701 I 0.767
HCOI00889400 Haemonchus contortus HCOI00889400 I 0.763
HPLM_0001493201 Haemonchus placei HPLM_0001493201 I 0.763
LOAG_00579 Loa loa LOAG_00579 I 0.771
LotgiG102775 Lottia gigantea LotgiG102775 I 0.771
LotgiG130661 Lottia gigantea LotgiG130661 I 0.783
Myotis_brandtii_OSR1_10031301 Myotis brandtii Myotis_brandtii_OSR1_10031301 I 0.811
nAv.1.0.1.g06169 Acanthocheilonema viteae nAv.1.0.1.g06169 I 0.771
NBR_0000990501 Nippostrongylus brasiliensis NBR_0000990501 I 0.767
nDi.2.2.2.g05871 Dirofilaria immitis nDi.2.2.2.g05871 I 0.771
NECAME_08408 Necator americanus NECAME_08408 I 0.760
nLs.2.1.2.g06827 Litomosoides sigmodontis nLs.2.1.2.g06827 I 0.764
nOo.2.0.1.g01159 Onchocerca ochengi nOo.2.0.1.g01159 I 0.771
odd-2 Caenorhabditis elegans WBGene00003846 D 0.770
Ogr01515 Ophisaurus gracilis Ogr01515 I 0.811
Ogr10172 Ophisaurus gracilis Ogr10172 I 0.827
OSR1 Anolis carolinensis ENSACAG00000007059 I 0.811
OSR1 Bos taurus ENSBTAG00000008113 I 0.811
OSR1 Canis familiaris ENSCAFG00000003775 I 0.811
OSR1 Callithrix jacchus ENSCJAG00000007379 I 0.811
OSR1 Cavia porcellus ENSCPOG00000002025 I 0.811
osr1 Danio rerio ENSDARG00000014091 I 0.811
OSR1 Dasypus novemcinctus ENSDNOG00000001304 I 0.811
Osr1 Dipodomys ordii ENSDORG00000000798 I 0.811
OSR1 Equus caballus ENSECAG00000013593 I 0.811
OSR1 Erinaceus europaeus ENSEEUG00000015377 I 0.811
OSR1 Echinops telfairi ENSETEG00000013563 I 0.811
OSR1 Felis catus ENSFCAG00000026754 I 0.811
OSR1 Homo sapiens ENSG00000143867 D 0.811
osr1 Gasterosteus aculeatus ENSGACG00000020147 I 0.811
OSR1 Gallus gallus ENSGALG00000016473 I 0.811
OSR1 Gorilla gorilla ENSGGOG00000016877 I 0.811
OSR1 Loxodonta africana ENSLAFG00000027174 I 0.811
OSR1 Meleagris gallopavo ENSMGAG00000014033 I 0.811
OSR1 Microcebus murinus ENSMICG00000004493 I 0.811
OSR1 Myotis lucifugus ENSMLUG00000011374 I 0.811
OSR1 Monodelphis domestica ENSMODG00000010584 I 0.811
Osr1 Mus musculus ENSMUSG00000048387 D 0.811
OSR1 Oryctolagus cuniculus ENSOCUG00000006091 I 0.811
OSR1 Otolemur garnettii ENSOGAG00000003047 I 0.811
osr1 Oryzias latipes ENSORLG00000010734 I 0.811
OSR1 Procavia capensis ENSPCAG00000008261 I 0.811
OSR1 Pan troglodytes ENSPTRG00000011683 I 0.811
OSR1 Pteropus vampyrus ENSPVAG00000009615 I 0.811
Osr1 Rattus norvegicus ENSRNOG00000004210 I 0.811
OSR1 Tupaia belangeri ENSTBEG00000004954 I 0.811
osr1 Tetraodon nigroviridis ENSTNIG00000018677 I 0.811
osr1 Tetraodon nigroviridis ENSTNIG00000018678 I 0.798
osr1 Takifugu rubripes ENSTRUG00000005046 I 0.811
OSR1 Tursiops truncatus ENSTTRG00000009823 I 0.811
osr1 Xenopus tropicalis XB-GENE-481410 I 0.811
osr2 Danio rerio ENSDARG00000038006 I 0.824
OSR2 Homo sapiens ENSG00000164920 D 0.827
osr2 Gasterosteus aculeatus ENSGACG00000003524 I 0.827
Osr2 Mus musculus ENSMUSG00000022330 D 0.827
Osr2 Rattus norvegicus ENSRNOG00000011136 I 0.827
OSR2 Sus scrofa ENSSSCG00000006073 I 0.827
osr2 Tetraodon nigroviridis ENSTNIG00000013301 I 0.827
osr2 Takifugu rubripes ENSTRUG00000011070 I 0.827
osr2.L Xenopus laevis XB-GENE-864802 I 0.827
osr2.S Xenopus laevis XB-GENE-6254720 I 0.827
Pvit_07082 Pogona vitticeps Pvit_07082 I 0.811
SMUV_0000818001 Syphacia muris SMUV_0000818001 I 0.759
Tal_R009607 Tyto alba Tal_R009607 I 0.811
TCNE_0000229401 Toxocara canis TCNE_0000229401 I 0.771
WBGene00239217 Onchocerca volvulus WBGene00239217 I 0.771