Gfo_R002632 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R002632 T135681_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB48
M08391_2.00 		Homo sapiens
HHDNTCCCTDR
YHAGGGANHDD		 ChIP-seq
Schmitges et al.(2016)
P10074.MEME 		0.809 0.952
ZBTB48
M08956_2.00 		Homo sapiens
BHBRVTCCCTDR
YHAGGGABYVDV		 Misc
Kulakovskiy et al.(2013)
ZBT48_HUMAN.H11MO.0.C 		0.809 0.952
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R002632 C2H2 ZF 40 62
Gfo_R002632 C2H2 ZF 68 89
Gfo_R002632 C2H2 ZF 99 121
Gfo_R002632 C2H2 ZF 127 150
Gfo_R002632 C2H2 ZF 185 208
Gfo_R002632 C2H2 ZF 214 236
Gfo_R002632 C2H2 ZF 242 264
Gfo_R002632 C2H2 ZF 270 293
Gfo_R002632 C2H2 ZF 299 321
Gfo_R002632 C2H2 ZF 327 349

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R005980 Calypte anna Aan_R005980 I 0.824
Alligator_sinensis_CCG010682.1 Alligator sinensis Alligator_sinensis_CCG010682.1 I 0.823
Cmyd_10005145 Chelonia mydas Cmyd_10005145 I 0.823
ENSAMEG00000009650 Ailuropoda melanoleuca ENSAMEG00000009650 I 0.805
ENSBTAP00000022249-D1 Bos grunniens ENSBTAP00000022249-D1 I 0.805
ENSCSAG00000000746 Chlorocebus sabaeus ENSCSAG00000000746 I 0.809
ENSFALG00000009796 Ficedula albicollis ENSFALG00000009796 I 0.826
ENSMEUG00000005297 Macropus eugenii ENSMEUG00000005297 I 0.809
ENSMGAG00000001275 Meleagris gallopavo ENSMGAG00000001275 I 0.824
ENSMPUG00000006774 Mustela putorius furo ENSMPUG00000006774 I 0.805
ENSNLEG00000008569 Nomascus leucogenys ENSNLEG00000008569 I 0.809
ENSP00000366902 Macaca fascicularis ENSP00000366902 I 0.809
ENSPANG00000021173 Papio anubis ENSPANG00000021173 I 0.809
ENSPPYG00000001938 Pongo abelii ENSPPYG00000001938 I 0.809
ENSPSIG00000004516 Pelodiscus sinensis ENSPSIG00000004516 I 0.824
ENSSTOG00000026188 Ictidomys tridecemlineatus ENSSTOG00000026188 I 0.808
Myotis_brandtii_ZBTB48_10024038 Myotis brandtii Myotis_brandtii_ZBTB48_10024038 I 0.794
Pvit_11906 Pogona vitticeps Pvit_11906 I 0.814
ZBTB48 Pan troglodytes ENSPTRG00000030844 I 0.809
Zbtb48 Rattus norvegicus ENSRNOG00000009595 I 0.809
ZBTB48 Sus scrofa ENSSSCG00000003383 I 0.805
Zbtb48 Mus musculus ENSMUSG00000028952 I 0.823
ZBTB48 Taeniopygia guttata ENSTGUG00000002589 I 0.805
ZBTB48 Ochotona princeps ENSOPRG00000012169 I 0.794
ZBTB48 Otolemur garnettii ENSOGAG00000001520 I 0.791
ZBTB48 Ornithorhynchus anatinus ENSOANG00000012292 I 0.796
ZBTB48 Macaca mulatta ENSMMUG00000032281 I 0.809
ZBTB48 Microcebus murinus ENSMICG00000016317 I 0.809
ZBTB48 Loxodonta africana ENSLAFG00000005854 I 0.809
ZBTB48 Gorilla gorilla ENSGGOG00000006819 I 0.809
ZBTB48 Gallus gallus ENSGALG00000000637 I 0.810
ZBTB48 Homo sapiens ENSG00000204859 D 0.809
ZBTB48 Felis catus ENSFCAG00000000660 I 0.804
ZBTB48 Echinops telfairi ENSETEG00000016655 I 0.809
ZBTB48 Equus caballus ENSECAG00000010788 I 0.809
Zbtb48 Dipodomys ordii ENSDORG00000009677 I 0.786
ZBTB48 Dasypus novemcinctus ENSDNOG00000004094 I 0.784
ZBTB48 Cavia porcellus ENSCPOG00000009998 I 0.809
ZBTB48 Bos taurus ENSBTAG00000016735 I 0.809