Gfo_R008104 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R008104 T135766_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OVOL2
M00234_2.00 		Homo sapiens
NCCGYTANNN
NNNTARCGGN		 PBM
Barrera et al.(2016)
OVOL2_D228E 		0.807 0.935
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R008104 C2H2 ZF 46 68
Gfo_R008104 C2H2 ZF 70 96
Gfo_R008104 C2H2 ZF 102 125
Gfo_R008104 C2H2 ZF 141 164

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA021810 Oryza indica BGIOSGA021810 N 0.000
BGIOSGA021811 Oryza indica BGIOSGA021811 N 0.000
BGIOSGA021812 Oryza indica BGIOSGA021812 N 0.000
LPERR06G04400 Leersia perrieri LPERR06G04400 N 0.000
LPERR06G12030 Leersia perrieri LPERR06G12030 N 0.000
OGLUM06G05040 Oryza glumaepatula OGLUM06G05040 N 0.000
ONIVA06G15060 Oryza nivara ONIVA06G15060 N 0.000
ONIVA06G15070 Oryza nivara ONIVA06G15070 N 0.000
ORGLA06G0044500 Oryza glaberrima ORGLA06G0044500 N 0.000
ORGLA06G0044900 Oryza glaberrima ORGLA06G0044900 N 0.000
ORUFI06G04920 Oryza rufipogon ORUFI06G04920 N 0.000
Sb10g009650 Sorghum bicolor Sb10g009650 N 0.000
Si025176m.g Setaria italica Si025176m.g I 0.000