cassava42054.valid.m1 (Manihot esculenta)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 cassava42054.valid.m1 T137878_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.804
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.771 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.762 0.783
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.762 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava42054.valid.m1 C2H2 ZF 38 60
cassava42054.valid.m1 C2H2 ZF 81 103

Links

Other C2H2 ZF family TFs
Other Manihot esculenta TFs

377 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC205250.3_FG004 Zea mays AC205250.3_FG004 I 0.765
AC206217.2_FG006 Zea mays AC206217.2_FG006 I 0.772
BGIOSGA000523 Oryza indica BGIOSGA000523 I 0.789
BGIOSGA004768 Oryza indica BGIOSGA004768 I 0.779
BGIOSGA013831 Oryza indica BGIOSGA013831 I 0.785
BGIOSGA013832 Oryza indica BGIOSGA013832 I 0.786
BGIOSGA033524 Oryza indica BGIOSGA033524 I
Bo2g161550 Brassica oleracea Bo2g161550 N
BRADI1G03770 Brachypodium distachyon BRADI1G03770 I 0.780
BRADI1G03780 Brachypodium distachyon BRADI1G03780 I 0.780
BRADI1G03790 Brachypodium distachyon BRADI1G03790 I 0.787
BRADI2G23160 Brachypodium distachyon BRADI2G23160 I 0.766
BRADI2G37430 Brachypodium distachyon BRADI2G37430 I 0.773
BRADI2G54500 Brachypodium distachyon BRADI2G54500 I 0.780
cassava39064.m1 Manihot esculenta cassava39064.m1 I 0.795
Ciclev10013311m.g Citrus clementina Ciclev10013311m.g I 0.801
Ciclev10032889m.g Citrus clementina Ciclev10032889m.g I 0.795
Ciclev10032899m.g Citrus clementina Ciclev10032899m.g I 0.795
Ciclev10032922m.g Citrus clementina Ciclev10032922m.g I 0.795
Eucgr.B02390 Eucalyptus grandis Eucgr.B02390 I 0.825
Eucgr.B02398 Eucalyptus grandis Eucgr.B02398 I 0.816
F775_08752 Aegilops tauschii F775_08752 I 0.756
F775_14723 Aegilops tauschii F775_14723 I
F775_17661 Aegilops tauschii F775_17661 I 0.757
F775_18608 Aegilops tauschii F775_18608 I 0.787
F775_18609 Aegilops tauschii F775_18609 I 0.786
F775_18611 Aegilops tauschii F775_18611 I 0.761
F775_22659 Aegilops tauschii F775_22659 I 0.763
F775_30269 Aegilops tauschii F775_30269 I 0.761
F775_30895 Aegilops tauschii F775_30895 I 0.762
F775_30896 Aegilops tauschii F775_30896 I 0.762
F775_52290 Aegilops tauschii F775_52290 I 0.761
F775_52353 Aegilops tauschii F775_52353 I 0.775
GLYMA11G15140 Glycine max GLYMA11G15140 I 0.762
Gorai.006G176000 Gossypium raimondii Gorai.006G176000 I 0.801
GRMZM2G002805 Zea mays GRMZM2G002805 I 0.775
GRMZM2G002815 Zea mays GRMZM2G002815 I 0.757
GRMZM2G061626 Zea mays GRMZM2G061626 I 0.775
GRMZM2G061897 Zea mays GRMZM2G061897 I 0.765
GRMZM2G112799 Zea mays GRMZM2G112799 I 0.780
GRMZM2G307402 Zea mays GRMZM2G307402 I 0.785
GRMZM2G338056 Zea mays GRMZM2G338056 I
GRMZM2G376061 Zea mays GRMZM2G376061 I 0.780
GRMZM5G804618 Zea mays GRMZM5G804618 I 0.789
GSMUA_Achr10G06730_001 Musa acuminata GSMUA_Achr10G06730_001 I 0.790
GSMUA_Achr10G13530_001 Musa acuminata GSMUA_Achr10G13530_001 I
GSMUA_Achr11G02250_001 Musa acuminata GSMUA_Achr11G02250_001 I 0.790
GSMUA_Achr11G21920_001 Musa acuminata GSMUA_Achr11G21920_001 I 0.790
GSMUA_Achr11G23970_001 Musa acuminata GSMUA_Achr11G23970_001 I 0.765
GSMUA_Achr11G24480_001 Musa acuminata GSMUA_Achr11G24480_001 I 0.795
GSMUA_Achr1G06720_001 Musa acuminata GSMUA_Achr1G06720_001 I 0.790
GSMUA_Achr5G28550_001 Musa acuminata GSMUA_Achr5G28550_001 I 0.819
GSMUA_Achr9G03210_001 Musa acuminata GSMUA_Achr9G03210_001 I 0.777
LPERR01G31460 Leersia perrieri LPERR01G31460 I 0.789
LPERR01G31500 Leersia perrieri LPERR01G31500 I 0.780
LPERR03G33230 Leersia perrieri LPERR03G33230 I 0.785
LPERR03G33240 Leersia perrieri LPERR03G33240 I 0.786
LPERR05G15220 Leersia perrieri LPERR05G15220 I 0.761
Lus10023433.g Linum usitatissimum Lus10023433.g I 0.773
Lus10040312.g Linum usitatissimum Lus10040312.g I 0.773
MDP0000237150 Malus domestica MDP0000237150 I 0.778
MLOC_14920 Hordeum vulgare MLOC_14920 I 0.757
MLOC_19822 Hordeum vulgare MLOC_19822 I 0.784
MLOC_39001 Hordeum vulgare MLOC_39001 I 0.773
MLOC_63032 Hordeum vulgare MLOC_63032 I 0.787
MLOC_67028 Hordeum vulgare MLOC_67028 I 0.757
MLOC_76196 Hordeum vulgare MLOC_76196 I 0.760
MTR_1g067640 Medicago truncatula MTR_1g067640 I 0.777
MTR_1g067650 Medicago truncatula MTR_1g067650 I 0.777
OB03G46010 Oryza brachyantha OB03G46010 I 0.787
OB11G27860 Oryza brachyantha OB11G27860 I
OBART03G39050 Oryza barthii OBART03G39050 I 0.787
OBART05G19310 Oryza barthii OBART05G19310 I
OBART11G23480 Oryza barthii OBART11G23480 I
OGLUM01G40470 Oryza glumaepatula OGLUM01G40470 I 0.789
OGLUM01G40530 Oryza glumaepatula OGLUM01G40530 I 0.779
OGLUM03G38900 Oryza glumaepatula OGLUM03G38900 I 0.785
OGLUM03G38910 Oryza glumaepatula OGLUM03G38910 I 0.786
OGLUM05G20400 Oryza glumaepatula OGLUM05G20400 I
OMERI01G33680 Oryza meridionalis OMERI01G33680 I 0.789
OMERI01G33710 Oryza meridionalis OMERI01G33710 I 0.779
OMERI03G35870 Oryza meridionalis OMERI03G35870 I 0.785
OMERI03G35880 Oryza meridionalis OMERI03G35880 I 0.786
OMERI05G16850 Oryza meridionalis OMERI05G16850 I
ONIVA01G41600 Oryza nivara ONIVA01G41600 I 0.789
ONIVA01G41740 Oryza nivara ONIVA01G41740 I 0.779
ONIVA03G40710 Oryza nivara ONIVA03G40710 I 0.785
ONIVA03G40720 Oryza nivara ONIVA03G40720 I 0.786
ONIVA05G20190 Oryza nivara ONIVA05G20190 I
OPUNC01G35440 Oryza punctata OPUNC01G35440 I 0.779
OPUNC01G35470 Oryza punctata OPUNC01G35470 I 0.779
OPUNC03G12210 Oryza punctata OPUNC03G12210 I 0.778
OPUNC05G16930 Oryza punctata OPUNC05G16930 I
OPUNC05G16960 Oryza punctata OPUNC05G16960 I
OPUNC11G19830 Oryza punctata OPUNC11G19830 I
orange1.1g031966m.g Citrus sinensis orange1.1g031966m.g I 0.801
orange1.1g040287m.g Citrus sinensis orange1.1g040287m.g I 0.795
orange1.1g041414m.g Citrus sinensis orange1.1g041414m.g I 0.795
orange1.1g044181m.g Citrus sinensis orange1.1g044181m.g I 0.795
ORGLA01G0304300 Oryza glaberrima ORGLA01G0304300 I 0.789
ORGLA01G0304700 Oryza glaberrima ORGLA01G0304700 I 0.779
ORGLA03G0358100 Oryza glaberrima ORGLA03G0358100 I 0.785
ORGLA03G0358200 Oryza glaberrima ORGLA03G0358200 I 0.786
ORGLA05G0167500 Oryza glaberrima ORGLA05G0167500 I
ORGLA11G0188100 Oryza glaberrima ORGLA11G0188100 I
ORUFI01G40000 Oryza rufipogon ORUFI01G40000 I 0.789
ORUFI03G40740 Oryza rufipogon ORUFI03G40740 I 0.785
ORUFI05G20520 Oryza rufipogon ORUFI05G20520 I
ORUFI11G25330 Oryza rufipogon ORUFI11G25330 I
OS01G0838600 Oryza sativa OS01G0838600 I 0.789
OS01G0839100 Oryza sativa OS01G0839100 I 0.779
OS03G0820300 Oryza sativa OS03G0820300 I 0.785
OS03G0820400 Oryza sativa OS03G0820400 I 0.786
OS05G0460900 Oryza sativa OS05G0460900 I
OS11G0702400 Oryza sativa OS11G0702400 I
Pavir.Da00814 Panicum virgatum Pavir.Da00814 I
Pavir.Da00815 Panicum virgatum Pavir.Da00815 I
Pavir.Da01393 Panicum virgatum Pavir.Da01393 I
Pavir.Da01563 Panicum virgatum Pavir.Da01563 I
Pavir.Ea03334 Panicum virgatum Pavir.Ea03334 I 0.765
Pavir.Eb03660 Panicum virgatum Pavir.Eb03660 I 0.780
Pavir.Ha00193 Panicum virgatum Pavir.Ha00193 I
Pavir.Ha00194 Panicum virgatum Pavir.Ha00194 I
Pavir.Hb00003 Panicum virgatum Pavir.Hb00003 I
Pavir.Hb00023 Panicum virgatum Pavir.Hb00023 I
Pavir.Hb00056 Panicum virgatum Pavir.Hb00056 I
Pavir.Ia00291 Panicum virgatum Pavir.Ia00291 I 0.757
Pavir.Ia00292 Panicum virgatum Pavir.Ia00292 I 0.763
Pavir.Ia00294 Panicum virgatum Pavir.Ia00294 I 0.765
Pavir.Ib04509 Panicum virgatum Pavir.Ib04509 I 0.765
Pavir.J00893 Panicum virgatum Pavir.J00893 I 0.757
Pavir.J00894 Panicum virgatum Pavir.J00894 I 0.787
Pavir.J03079 Panicum virgatum Pavir.J03079 I
Pavir.J04850 Panicum virgatum Pavir.J04850 I 0.784
Pavir.J14296 Panicum virgatum Pavir.J14296 I
Pavir.J14338 Panicum virgatum Pavir.J14338 I 0.780
Pavir.J30713 Panicum virgatum Pavir.J30713 I
Pavir.J32634 Panicum virgatum Pavir.J32634 I 0.766
PGSC0003DMG401030312 Solanum tuberosum PGSC0003DMG401030312 I 0.786
Pm000815 Prunus mume Pm000815 I 0.798
Pm002762 Prunus mume Pm002762 I 0.802
POPTR_0001s24250 Populus trichocarpa POPTR_0001s24250 I 0.777
POPTR_0009s03280 Populus trichocarpa POPTR_0009s03280 I 0.777
POPTR_1833s00200 Populus trichocarpa POPTR_1833s00200 I 0.777
PRUPE_ppa012242mg Prunus persica PRUPE_ppa012242mg I 0.792
PRUPE_ppa022066mg Prunus persica PRUPE_ppa022066mg I 0.802
SapurV1A.0040s0050 Salix purpurea SapurV1A.0040s0050 I 0.778
SapurV1A.4260s0020 Salix purpurea SapurV1A.4260s0020 I 0.778
Sb01g003280 Sorghum bicolor Sb01g003280 I 0.787
Sb03g039270 Sorghum bicolor Sb03g039270 I 0.780
Sb05g027450 Sorghum bicolor Sb05g027450 I
Sb09g022660 Sorghum bicolor Sb09g022660 I 0.772
Sb10g031270 Sorghum bicolor Sb10g031270 I 0.784
Si003051m.g Setaria italica Si003051m.g I 0.780
Si008395m.g Setaria italica Si008395m.g I 0.784
Si026973m.g Setaria italica Si026973m.g I
Si027432m.g Setaria italica Si027432m.g I
Si037251m.g Setaria italica Si037251m.g I 0.757
Si037672m.g Setaria italica Si037672m.g I 0.787
Solyc06g075780.1 Solanum lycopersicum Solyc06g075780.1 I 0.786
Solyc11g073060.1 Solanum lycopersicum Solyc11g073060.1 I 0.790
TRAES3BF117500110CFD_g Triticum aestivum TRAES3BF117500110CFD_g I 0.790
TRAES3BF127400030CFD_g Triticum aestivum TRAES3BF127400030CFD_g I 0.780
Traes_1AS_8F01029FE Triticum aestivum Traes_1AS_8F01029FE I 0.772
Traes_1AS_B282BFB83 Triticum aestivum Traes_1AS_B282BFB83 I 0.779
Traes_1BS_527ED00B9 Triticum aestivum Traes_1BS_527ED00B9 I 0.772
Traes_1BS_7B7D5282B Triticum aestivum Traes_1BS_7B7D5282B I 0.772
Traes_1DS_75AF80583 Triticum aestivum Traes_1DS_75AF80583 I 0.772
Traes_1DS_D1F453705 Triticum aestivum Traes_1DS_D1F453705 I 0.772
Traes_4DS_276818E4F Triticum aestivum Traes_4DS_276818E4F I
Traes_5BL_3A9D3CEEF Triticum aestivum Traes_5BL_3A9D3CEEF I 0.785
Traes_5BL_3B50B6963 Triticum aestivum Traes_5BL_3B50B6963 I 0.757
Traes_5BL_630A8A142 Triticum aestivum Traes_5BL_630A8A142 I 0.761
Traes_5BL_63AE36D3A Triticum aestivum Traes_5BL_63AE36D3A I 0.761
Traes_5BL_6F2D345E2 Triticum aestivum Traes_5BL_6F2D345E2 I 0.763
Traes_5BL_8DB8274DB1 Triticum aestivum Traes_5BL_8DB8274DB1 I 0.763
Traes_5BL_9C687EE11 Triticum aestivum Traes_5BL_9C687EE11 I 0.785
Traes_5BL_B038BE0A3 Triticum aestivum Traes_5BL_B038BE0A3 I 0.757
Traes_5BL_BB99746DD Triticum aestivum Traes_5BL_BB99746DD I 0.784
Traes_5BL_D53A846BE Triticum aestivum Traes_5BL_D53A846BE I 0.761
Traes_5BL_F74D668D9 Triticum aestivum Traes_5BL_F74D668D9 I 0.761
Traes_5DL_4B4927090 Triticum aestivum Traes_5DL_4B4927090 I 0.763
Traes_5DL_4E890ABF3 Triticum aestivum Traes_5DL_4E890ABF3 I 0.761
Traes_5DL_50E35B4F3 Triticum aestivum Traes_5DL_50E35B4F3 I 0.787
Traes_5DL_90F570468 Triticum aestivum Traes_5DL_90F570468 I 0.761
Traes_5DL_9D713AD9C Triticum aestivum Traes_5DL_9D713AD9C I 0.778
Traes_5DL_F269EF70D Triticum aestivum Traes_5DL_F269EF70D I 0.757
TRIUR3_01057 Triticum urartu TRIUR3_01057 N
TRIUR3_01060 Triticum urartu TRIUR3_01060 I 0.762
TRIUR3_01063 Triticum urartu TRIUR3_01063 I 0.786
TRIUR3_01065 Triticum urartu TRIUR3_01065 I 0.787
TRIUR3_04728 Triticum urartu TRIUR3_04728 I 0.772
TRIUR3_11899 Triticum urartu TRIUR3_11899 I 0.773
TRIUR3_12166 Triticum urartu TRIUR3_12166 I 0.757
TRIUR3_15911 Triticum urartu TRIUR3_15911 I 0.757
TRIUR3_15912 Triticum urartu TRIUR3_15912 I 0.761