Lus10026369.g (Linum usitatissimum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Lus10026369.g T143130_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.806 0.909
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.806 0.909
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10026369 C2H2 ZF 135 156
Lus10026369 C2H2 ZF 155 182

Links

Other C2H2 ZF family TFs
Other Linum usitatissimum TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29889.m003394 Ricinus communis 29889.m003394 N
Aquca_029_00055 Aquilegia coerulea Aquca_029_00055 N
AT3G17450 Arabidopsis thaliana AT3G17450 N
Bo00763s120 Brassica oleracea Bo00763s120 N
Bostr.19424s0919 Boechera stricta Bostr.19424s0919 N
Cagra.4396s0051 Capsella grandiflora Cagra.4396s0051 N
Carubv10013083m.g Capsella rubella Carubv10013083m.g N
cassava36089.valid.m1 Manihot esculenta cassava36089.valid.m1 N
Ciclev10024195m.g Citrus clementina Ciclev10024195m.g N
Cucsa.252180 Cucumis sativus Cucsa.252180 N
Eucgr.B02527 Eucalyptus grandis Eucgr.B02527 N
evm.TU.supercontig_519.2 Carica papaya evm.TU.supercontig_519.2 N
GLYMA09G09291 Glycine max GLYMA09G09291 N
GLYMA15G21351 Glycine max GLYMA15G21351 N
Gorai.008G135400 Gossypium raimondii Gorai.008G135400 N
GSMUA_Achr3G12820_001 Musa acuminata GSMUA_Achr3G12820_001 N
LjT35D18.120.nc Lotus japonicus LjT35D18.120.nc N
MDP0000133479 Malus domestica MDP0000133479 N
MDP0000314867 Malus domestica MDP0000314867 N
orange1.1g044693m.g Citrus sinensis orange1.1g044693m.g N
PK21594.1 Cannabis sativa PK21594.1 N
Pm008491 Prunus mume Pm008491 N
POPTR_0002s18950 Populus trichocarpa POPTR_0002s18950 N
POPTR_0014s10940 Populus trichocarpa POPTR_0014s10940 N
PRUPE_ppa001126mg Prunus persica PRUPE_ppa001126mg N
SapurV1A.0014s0420 Salix purpurea SapurV1A.0014s0420 N
SapurV1A.0294s0300 Salix purpurea SapurV1A.0294s0300 N
TCM_004927 Theobroma cacao TCM_004927 N
TCM_021492 Theobroma cacao TCM_021492 N
Thhalv10020031m.g Eutrema salsugineum Thhalv10020031m.g N
VIT_05s0020g00790 Vitis vinifera VIT_05s0020g00790 N