MDP0000257423 (Malus domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 MDP0000257423 T143204_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.826
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.826
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.795 0.761
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.786 0.783
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.786 0.783
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.774 0.696
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.771 0.761
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.763 0.804
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000257423 C2H2 ZF 73 95
MDP0000257423 C2H2 ZF 127 149

Links

Other C2H2 ZF family TFs
Other Malus domestica TFs

383 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29613.m000377 Ricinus communis 29613.m000377 I
29613.m000379 Ricinus communis 29613.m000379 I
Aquca_014_00855 Aquilegia coerulea Aquca_014_00855 I
AT2G42040 Arabidopsis thaliana AT2G42040 D
BGIOSGA005516 Oryza indica BGIOSGA005516 I
BGIOSGA022518 Oryza indica BGIOSGA022518 I
Bo3g035920 Brassica oleracea Bo3g035920 I
Bo4g014690 Brassica oleracea Bo4g014690 I
Bo4g191280 Brassica oleracea Bo4g191280 I
Bostr.25993s0574 Boechera stricta Bostr.25993s0574 I
Bra000251 Brassica rapa Bra000251 I
Bra004667 Brassica rapa Bra004667 I
Bra016897 Brassica rapa Bra016897 I
BRADI1G46270 Brachypodium distachyon BRADI1G46270 I
Cagra.13389s0020 Capsella grandiflora Cagra.13389s0020 I
Carubv10023878m.g Capsella rubella Carubv10023878m.g I
cassava31648.valid.m1 Manihot esculenta cassava31648.valid.m1 I
cassava36463.valid.m1 Manihot esculenta cassava36463.valid.m1 I
cassava36464.valid.m1 Manihot esculenta cassava36464.valid.m1 I
Ciclev10012160m.g Citrus clementina Ciclev10012160m.g I
Cucsa.242590 Cucumis sativus Cucsa.242590 I
Eucgr.A02456 Eucalyptus grandis Eucgr.A02456 I
evm.TU.supercontig_85.54 Carica papaya evm.TU.supercontig_85.54 I
F775_01928 Aegilops tauschii F775_01928 I
fgenesh2_kg.4__2350__AT2G42040.1 Arabidopsis lyrata fgenesh2_kg.4__2350__AT2G42040.1 I
gene00456-v1.0-hybrid Fragaria vesca gene00456-v1.0-hybrid I
GLYMA02G28962 Glycine max GLYMA02G28962 I
GLYMA03G30170 Glycine max GLYMA03G30170 I
GLYMA09G16841 Glycine max GLYMA09G16841 I
GLYMA19G33070 Glycine max GLYMA19G33070 I
Gorai.002G156300 Gossypium raimondii Gorai.002G156300 I
Gorai.012G100300 Gossypium raimondii Gorai.012G100300 I
GRMZM2G033915 Zea mays GRMZM2G033915 I
GRMZM2G134552 Zea mays GRMZM2G134552 N
GRMZM2G165991 Zea mays GRMZM2G165991 I
GSMUA_Achr10G29530_001 Musa acuminata GSMUA_Achr10G29530_001 I
GSMUA_Achr3G07730_001 Musa acuminata GSMUA_Achr3G07730_001 I
GSMUA_Achr3G20210_001 Musa acuminata GSMUA_Achr3G20210_001 I
GSMUA_Achr7G18600_001 Musa acuminata GSMUA_Achr7G18600_001 I
GSMUA_Achr9G15730_001 Musa acuminata GSMUA_Achr9G15730_001 I
LjT35F01.80.nd Lotus japonicus LjT35F01.80.nd I
LPERR02G28190 Leersia perrieri LPERR02G28190 I
LPERR06G06210 Leersia perrieri LPERR06G06210 I
MDP0000121493 Malus domestica MDP0000121493 I
MDP0000154434 Malus domestica MDP0000154434 I
mgf007626m Mimulus guttatus mgf007626m I
MLOC_17575 Hordeum vulgare MLOC_17575 I
MTR_1g054175 Medicago truncatula MTR_1g054175 I
MTR_7g093350 Medicago truncatula MTR_7g093350 I
MTR_7g093360 Medicago truncatula MTR_7g093360 I
OB06G16230 Oryza brachyantha OB06G16230 I
OBART06G06800 Oryza barthii OBART06G06800 I
OGLUM02G35430 Oryza glumaepatula OGLUM02G35430 I
OGLUM06G07170 Oryza glumaepatula OGLUM06G07170 I
OMERI02G32570 Oryza meridionalis OMERI02G32570 I
OMERI06G07980 Oryza meridionalis OMERI06G07980 I
ONIVA02G36360 Oryza nivara ONIVA02G36360 I
ONIVA06G08110 Oryza nivara ONIVA06G08110 I
OPUNC02G31650 Oryza punctata OPUNC02G31650 I
OPUNC06G06450 Oryza punctata OPUNC06G06450 I
orange1.1g019760m.g Citrus sinensis orange1.1g019760m.g I
ORGLA02G0296600 Oryza glaberrima ORGLA02G0296600 I
ORGLA06G0063300 Oryza glaberrima ORGLA06G0063300 I
ORUFI02G35820 Oryza rufipogon ORUFI02G35820 I
ORUFI06G07050 Oryza rufipogon ORUFI06G07050 I
OS02G0773600 Oryza sativa OS02G0773600 I
OS06G0207600 Oryza sativa OS06G0207600 I
Pavir.J23833 Panicum virgatum Pavir.J23833 I
Pavir.J25248 Panicum virgatum Pavir.J25248 I
PDK_20s1436981g002 Phoenix dactylifera PDK_20s1436981g002 I
PGSC0003DMG400023669 Solanum tuberosum PGSC0003DMG400023669 I
PK26699.1 Cannabis sativa PK26699.1 I
Pm025936 Prunus mume Pm025936 I
POPTR_0006s20770 Populus trichocarpa POPTR_0006s20770 I
POPTR_0006s20790 Populus trichocarpa POPTR_0006s20790 I
POPTR_0016s05840 Populus trichocarpa POPTR_0016s05840 I
POPTR_0016s05850 Populus trichocarpa POPTR_0016s05850 I
PRUPE_ppa016277mg Prunus persica PRUPE_ppa016277mg I
SapurV1A.0251s0220 Salix purpurea SapurV1A.0251s0220 I
SapurV1A.0251s0230 Salix purpurea SapurV1A.0251s0230 I
SapurV1A.0854s0090 Salix purpurea SapurV1A.0854s0090 I
SapurV1A.0854s0100 Salix purpurea SapurV1A.0854s0100 I
SapurV1A.3188s0010 Salix purpurea SapurV1A.3188s0010 I
Sb10g006810 Sorghum bicolor Sb10g006810 I
Solyc10g080530.1 Solanum lycopersicum Solyc10g080530.1 I
TCM_024932 Theobroma cacao TCM_024932 I
Thhalv10017052m.g Eutrema salsugineum Thhalv10017052m.g I
VIT_08s0007g06640 Vitis vinifera VIT_08s0007g06640 I
VIT_08s0007g06690 Vitis vinifera VIT_08s0007g06690 I