Pavir.J25248 (Panicum virgatum)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 Pavir.J25248 T351743_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42040
M01088_2.00 		Arabidopsis thaliana
NBTRCACYNN
NNRGTGYAVN		 PBM
Sullivan et al.(2014)
pTH7503 		0.810 0.810
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J25248.1.p WRC 176 217

Links

Other WRC family TFs
Other Panicum virgatum TFs

96 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb10g006810 Sorghum bicolor Sb10g006810 I 1.000
Pavir.J23833 Panicum virgatum Pavir.J23833 I 1.000
BRADI1G46270 Brachypodium distachyon BRADI1G46270 I 0.952
LPERR02G28190 Leersia perrieri LPERR02G28190 I 0.952
GRMZM2G033915 Zea mays GRMZM2G033915 I 0.905
BGIOSGA005516 Oryza indica BGIOSGA005516 I 0.881
OB06G16230 Oryza brachyantha OB06G16230 I 0.881
OBART06G06800 Oryza barthii OBART06G06800 I 0.881
OGLUM02G35430 Oryza glumaepatula OGLUM02G35430 I 0.881
OMERI02G32570 Oryza meridionalis OMERI02G32570 I 0.881
ONIVA02G36360 Oryza nivara ONIVA02G36360 I 0.881
OPUNC02G31650 Oryza punctata OPUNC02G31650 I 0.881
OPUNC06G06450 Oryza punctata OPUNC06G06450 I 0.881
ORGLA02G0296600 Oryza glaberrima ORGLA02G0296600 I 0.881
ORUFI02G35820 Oryza rufipogon ORUFI02G35820 I 0.881
OS02G0773600 Oryza sativa OS02G0773600 I 0.881
Si019733m.g Setaria italica Si019733m.g N 0.881
Pavir.Aa00328 Panicum virgatum Pavir.Aa00328 N 0.881
Pavir.J07916 Panicum virgatum Pavir.J07916 N 0.881
F775_01928 Aegilops tauschii F775_01928 I 0.875
BGIOSGA022518 Oryza indica BGIOSGA022518 I 0.857
LPERR06G06210 Leersia perrieri LPERR06G06210 I 0.857
OGLUM06G07170 Oryza glumaepatula OGLUM06G07170 I 0.857
ONIVA06G08110 Oryza nivara ONIVA06G08110 I 0.857
ORGLA06G0063300 Oryza glaberrima ORGLA06G0063300 I 0.857
ORUFI06G07050 Oryza rufipogon ORUFI06G07050 I 0.857
OS06G0207600 Oryza sativa OS06G0207600 I 0.857
LjT35F01.80.nd Lotus japonicus LjT35F01.80.nd I 0.857
MLOC_17575 Hordeum vulgare MLOC_17575 I 0.837
GSMUA_Achr3G07730_001 Musa acuminata GSMUA_Achr3G07730_001 I 0.833
OMERI06G07980 Oryza meridionalis OMERI06G07980 I 0.833
PGSC0003DMG400023669 Solanum tuberosum PGSC0003DMG400023669 I 0.833
Solyc10g080530.1 Solanum lycopersicum Solyc10g080530.1 I 0.833
SapurV1A.0251s0220 Salix purpurea SapurV1A.0251s0220 I 0.833
SapurV1A.3188s0010 Salix purpurea SapurV1A.3188s0010 I 0.833
GRMZM2G165991 Zea mays GRMZM2G165991 I 0.829
POPTR_0006s20770 Populus trichocarpa POPTR_0006s20770 I 0.814
POPTR_0016s05850 Populus trichocarpa POPTR_0016s05850 I 0.814
AT2G42040 Arabidopsis thaliana AT2G42040 D 0.810
fgenesh2_kg.4__2350__AT2G42040.1 Arabidopsis lyrata fgenesh2_kg.4__2350__AT2G42040.1 I 0.810
GSMUA_Achr10G29530_001 Musa acuminata GSMUA_Achr10G29530_001 I 0.810
GSMUA_Achr7G18600_001 Musa acuminata GSMUA_Achr7G18600_001 I 0.810
POPTR_0006s20790 Populus trichocarpa POPTR_0006s20790 I 0.810
VIT_08s0007g06640 Vitis vinifera VIT_08s0007g06640 I 0.810
29613.m000377 Ricinus communis 29613.m000377 I 0.810
Cucsa.242590 Cucumis sativus Cucsa.242590 I 0.810
Cagra.13389s0020 Capsella grandiflora Cagra.13389s0020 I 0.810
Carubv10023878m.g Capsella rubella Carubv10023878m.g I 0.810
gene00456-v1.0-hybrid Fragaria vesca gene00456-v1.0-hybrid I 0.810
Gorai.002G156300 Gossypium raimondii Gorai.002G156300 I 0.810
SapurV1A.0251s0230 Salix purpurea SapurV1A.0251s0230 I 0.810
Thhalv10017052m.g Eutrema salsugineum Thhalv10017052m.g I 0.810
PK26699.1 Cannabis sativa PK26699.1 I 0.810
PDK_20s1436981g002 Phoenix dactylifera PDK_20s1436981g002 I 0.810
GLYMA02G28962 Glycine max GLYMA02G28962 I 0.791
GLYMA03G30170 Glycine max GLYMA03G30170 I 0.791
GLYMA09G16841 Glycine max GLYMA09G16841 I 0.791
GLYMA19G33070 Glycine max GLYMA19G33070 I 0.791
GSMUA_Achr3G20210_001 Musa acuminata GSMUA_Achr3G20210_001 I 0.791
GSMUA_Achr9G15730_001 Musa acuminata GSMUA_Achr9G15730_001 I 0.791
MTR_1g054175 Medicago truncatula MTR_1g054175 I 0.791
MTR_7g093350 Medicago truncatula MTR_7g093350 I 0.791
MTR_7g093360 Medicago truncatula MTR_7g093360 I 0.791
POPTR_0016s05840 Populus trichocarpa POPTR_0016s05840 I 0.791
PRUPE_ppa016277mg Prunus persica PRUPE_ppa016277mg I 0.791
TCM_024932 Theobroma cacao TCM_024932 I 0.791
VIT_08s0007g06690 Vitis vinifera VIT_08s0007g06690 I 0.791
Ca_07320 Cicer arietinum Ca_07320 I 0.791
Pm025936 Prunus mume Pm025936 I 0.791
29613.m000379 Ricinus communis 29613.m000379 I 0.791
cassava31648.valid.m1 Manihot esculenta cassava31648.valid.m1 I 0.791
cassava36463.valid.m1 Manihot esculenta cassava36463.valid.m1 I 0.791
cassava36464.valid.m1 Manihot esculenta cassava36464.valid.m1 I 0.791
Ciclev10012160m.g Citrus clementina Ciclev10012160m.g I 0.791
Eucgr.A02456 Eucalyptus grandis Eucgr.A02456 I 0.791
evm.TU.supercontig_85.54 Carica papaya evm.TU.supercontig_85.54 I 0.791
Gorai.012G100300 Gossypium raimondii Gorai.012G100300 I 0.791
MDP0000121493 Malus domestica MDP0000121493 I 0.791
MDP0000154434 Malus domestica MDP0000154434 I 0.791
orange1.1g019760m.g Citrus sinensis orange1.1g019760m.g I 0.791
SapurV1A.0854s0090 Salix purpurea SapurV1A.0854s0090 I 0.791
SapurV1A.0854s0100 Salix purpurea SapurV1A.0854s0100 I 0.791
Bo3g035920 Brassica oleracea Bo3g035920 I 0.786
Bo4g191280 Brassica oleracea Bo4g191280 I 0.786
Bra000251 Brassica rapa Bra000251 I 0.786
Bra016897 Brassica rapa Bra016897 I 0.786
Bostr.25993s0574 Boechera stricta Bostr.25993s0574 I 0.786
Bo4g014690 Brassica oleracea Bo4g014690 I 0.767
Bra004667 Brassica rapa Bra004667 I 0.762
GRMZM2G134552 Zea mays GRMZM2G134552 N 0.762
mgf007626m Mimulus guttatus mgf007626m I 0.762
Lus10004164.g Linum usitatissimum Lus10004164.g I 0.762
Lus10021062.g Linum usitatissimum Lus10021062.g I 0.762
Aquca_014_00855 Aquilegia coerulea Aquca_014_00855 I 0.744
AMTR_s00024p00159910 Amborella trichopoda AMTR_s00024p00159910 I 0.714
Sb04g034665 Sorghum bicolor Sb04g034665 N 0.714