AMTR_s00024p00159910 (Amborella trichopoda)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF08879 (WRC) IPR014977 AMTR_s00024p00159910 T350674_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42040
M01088_2.00 		Arabidopsis thaliana
NBTRCACYNN
NNRGTGYAVN		 PBM
Sullivan et al.(2014)
pTH7503 		0.756 0.756
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN11116 WRC 178 218

Links

Other WRC family TFs
Other Amborella trichopoda TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC06G06450 Oryza punctata OPUNC06G06450 I 0.780
BGIOSGA022518 Oryza indica BGIOSGA022518 I 0.762
LPERR06G06210 Leersia perrieri LPERR06G06210 I 0.762
OB06G16230 Oryza brachyantha OB06G16230 I 0.762
OGLUM06G07170 Oryza glumaepatula OGLUM06G07170 I 0.762
ONIVA06G08110 Oryza nivara ONIVA06G08110 I 0.762
ORGLA06G0063300 Oryza glaberrima ORGLA06G0063300 I 0.762
ORUFI06G07050 Oryza rufipogon ORUFI06G07050 I 0.762
OS06G0207600 Oryza sativa OS06G0207600 I 0.762
BGIOSGA005516 Oryza indica BGIOSGA005516 I 0.756
OBART06G06800 Oryza barthii OBART06G06800 I 0.756
OGLUM02G35430 Oryza glumaepatula OGLUM02G35430 I 0.756
OMERI02G32570 Oryza meridionalis OMERI02G32570 I 0.756
OMERI06G07980 Oryza meridionalis OMERI06G07980 I 0.756
ONIVA02G36360 Oryza nivara ONIVA02G36360 I 0.756
OPUNC02G31650 Oryza punctata OPUNC02G31650 I 0.756
ORGLA02G0296600 Oryza glaberrima ORGLA02G0296600 I 0.756
ORUFI02G35820 Oryza rufipogon ORUFI02G35820 I 0.756
OS02G0773600 Oryza sativa OS02G0773600 I 0.756
PGSC0003DMG400023669 Solanum tuberosum PGSC0003DMG400023669 I 0.756
Solyc10g080530.1 Solanum lycopersicum Solyc10g080530.1 I 0.756
Cucsa.242590 Cucumis sativus Cucsa.242590 I 0.756
AT2G42040 Arabidopsis thaliana AT2G42040 D 0.738
fgenesh2_kg.4__2350__AT2G42040.1 Arabidopsis lyrata fgenesh2_kg.4__2350__AT2G42040.1 I 0.738
Cagra.13389s0020 Capsella grandiflora Cagra.13389s0020 I 0.738
Carubv10023878m.g Capsella rubella Carubv10023878m.g I 0.738
SapurV1A.0251s0230 Salix purpurea SapurV1A.0251s0230 I 0.732
PK26699.1 Cannabis sativa PK26699.1 I 0.732
POPTR_0006s20770 Populus trichocarpa POPTR_0006s20770 I 0.721
POPTR_0016s05840 Populus trichocarpa POPTR_0016s05840 I 0.721
POPTR_0016s05850 Populus trichocarpa POPTR_0016s05850 I 0.721
VIT_08s0007g06690 Vitis vinifera VIT_08s0007g06690 I 0.721
Ciclev10012160m.g Citrus clementina Ciclev10012160m.g I 0.721
gene00456-v1.0-hybrid Fragaria vesca gene00456-v1.0-hybrid I 0.721
Gorai.002G156300 Gossypium raimondii Gorai.002G156300 I 0.721
MDP0000121493 Malus domestica MDP0000121493 I 0.721
MDP0000154434 Malus domestica MDP0000154434 I 0.721
orange1.1g019760m.g Citrus sinensis orange1.1g019760m.g I 0.721
SapurV1A.0854s0090 Salix purpurea SapurV1A.0854s0090 I 0.721
SapurV1A.0854s0100 Salix purpurea SapurV1A.0854s0100 I 0.721
Thhalv10017052m.g Eutrema salsugineum Thhalv10017052m.g I 0.721
LPERR02G28190 Leersia perrieri LPERR02G28190 I 0.714
Sb10g006810 Sorghum bicolor Sb10g006810 I 0.714
Bostr.25993s0574 Boechera stricta Bostr.25993s0574 I 0.714
Pavir.J23833 Panicum virgatum Pavir.J23833 I 0.714
Pavir.J25248 Panicum virgatum Pavir.J25248 I 0.714
Bo4g191280 Brassica oleracea Bo4g191280 I 0.707
Bra004667 Brassica rapa Bra004667 I 0.707
BRADI1G46270 Brachypodium distachyon BRADI1G46270 I 0.707
GRMZM2G033915 Zea mays GRMZM2G033915 I 0.707
GRMZM2G165991 Zea mays GRMZM2G165991 I 0.707
GSMUA_Achr3G07730_001 Musa acuminata GSMUA_Achr3G07730_001 I 0.707
Lus10004164.g Linum usitatissimum Lus10004164.g I 0.707