CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10004164.g
(
Linum usitatissimum
)
WRC
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF08879 (WRC)
IPR014977
Lus10004164.g
T351660_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G42040
M01088_2.00
Arabidopsis thaliana
NBTRCACYNN
NNRGTGYAVN
PBM
Sullivan et al.(2014)
pTH7503
0.756
0.756
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10004164
WRC
80
120
EAGSRCSRVNGRGWRCSQPTLVGYALCEHHLGKARIRTIST
Links
Other
WRC
family TFs
Other
Linum usitatissimum
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10021062.g
Linum usitatissimum
Lus10021062.g
I
1.000
F775_01928
Aegilops tauschii
F775_01928
I
0.833
BRADI1G46270
Brachypodium distachyon
BRADI1G46270
I
0.805
GRMZM2G033915
Zea mays
GRMZM2G033915
I
0.805
LPERR06G06210
Leersia perrieri
LPERR06G06210
I
0.805
OB06G16230
Oryza brachyantha
OB06G16230
I
0.805
OMERI06G07980
Oryza meridionalis
OMERI06G07980
I
0.805
OPUNC06G06450
Oryza punctata
OPUNC06G06450
I
0.805
BGIOSGA022518
Oryza indica
BGIOSGA022518
I
0.786
OGLUM06G07170
Oryza glumaepatula
OGLUM06G07170
I
0.786
ONIVA06G08110
Oryza nivara
ONIVA06G08110
I
0.786
ORGLA06G0063300
Oryza glaberrima
ORGLA06G0063300
I
0.786
ORUFI06G07050
Oryza rufipogon
ORUFI06G07050
I
0.786
OS06G0207600
Oryza sativa
OS06G0207600
I
0.786
BGIOSGA005516
Oryza indica
BGIOSGA005516
I
0.780
LPERR02G28190
Leersia perrieri
LPERR02G28190
I
0.780
OBART06G06800
Oryza barthii
OBART06G06800
I
0.780
OGLUM02G35430
Oryza glumaepatula
OGLUM02G35430
I
0.780
OMERI02G32570
Oryza meridionalis
OMERI02G32570
I
0.780
ONIVA02G36360
Oryza nivara
ONIVA02G36360
I
0.780
OPUNC02G31650
Oryza punctata
OPUNC02G31650
I
0.780
ORGLA02G0296600
Oryza glaberrima
ORGLA02G0296600
I
0.780
ORUFI02G35820
Oryza rufipogon
ORUFI02G35820
I
0.780
OS02G0773600
Oryza sativa
OS02G0773600
I
0.780
Sb10g006810
Sorghum bicolor
Sb10g006810
I
0.762
Pavir.J23833
Panicum virgatum
Pavir.J23833
I
0.762
Pavir.J25248
Panicum virgatum
Pavir.J25248
I
0.762
AT2G42040
Arabidopsis thaliana
AT2G42040
D
0.756
Bo4g191280
Brassica oleracea
Bo4g191280
I
0.756
fgenesh2_kg.4__2350__AT2G42040.1
Arabidopsis lyrata
fgenesh2_kg.4__2350__AT2G42040.1
I
0.756
GRMZM2G165991
Zea mays
GRMZM2G165991
I
0.756
GSMUA_Achr10G29530_001
Musa acuminata
GSMUA_Achr10G29530_001
I
0.756
GSMUA_Achr7G18600_001
Musa acuminata
GSMUA_Achr7G18600_001
I
0.756
POPTR_0006s20790
Populus trichocarpa
POPTR_0006s20790
I
0.756
Sb04g034665
Sorghum bicolor
Sb04g034665
N
0.756
VIT_08s0007g06640
Vitis vinifera
VIT_08s0007g06640
I
0.756
Cagra.13389s0020
Capsella grandiflora
Cagra.13389s0020
I
0.756
Carubv10023878m.g
Capsella rubella
Carubv10023878m.g
I
0.756
Gorai.002G156300
Gossypium raimondii
Gorai.002G156300
I
0.756
SapurV1A.0251s0220
Salix purpurea
SapurV1A.0251s0220
I
0.756
SapurV1A.0251s0230
Salix purpurea
SapurV1A.0251s0230
I
0.756
SapurV1A.3188s0010
Salix purpurea
SapurV1A.3188s0010
I
0.756
Thhalv10017052m.g
Eutrema salsugineum
Thhalv10017052m.g
I
0.756
LjT35F01.80.nd
Lotus japonicus
LjT35F01.80.nd
I
0.756
PDK_20s1436981g002
Phoenix dactylifera
PDK_20s1436981g002
I
0.756
MLOC_17575
Hordeum vulgare
MLOC_17575
I
0.744
Bo3g035920
Brassica oleracea
Bo3g035920
I
0.732
Bra000251
Brassica rapa
Bra000251
I
0.732
Bra016897
Brassica rapa
Bra016897
I
0.732
GRMZM2G134552
Zea mays
GRMZM2G134552
N
0.732
GSMUA_Achr3G07730_001
Musa acuminata
GSMUA_Achr3G07730_001
I
0.732
PGSC0003DMG400023669
Solanum tuberosum
PGSC0003DMG400023669
I
0.732
Solyc10g080530.1
Solanum lycopersicum
Solyc10g080530.1
I
0.732
29613.m000377
Ricinus communis
29613.m000377
I
0.732
Cucsa.242590
Cucumis sativus
Cucsa.242590
I
0.732
gene00456-v1.0-hybrid
Fragaria vesca
gene00456-v1.0-hybrid
I
0.732
PK26699.1
Cannabis sativa
PK26699.1
I
0.732
GSMUA_Achr3G20210_001
Musa acuminata
GSMUA_Achr3G20210_001
I
0.721
Aquca_014_00855
Aquilegia coerulea
Aquca_014_00855
I
0.721
Bostr.25993s0574
Boechera stricta
Bostr.25993s0574
I
0.714
AMTR_s00024p00159910
Amborella trichopoda
AMTR_s00024p00159910
I
0.707
Bra004667
Brassica rapa
Bra004667
I
0.707
mgf007626m
Mimulus guttatus
mgf007626m
I
0.707