Pavir.J06328 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.J06328 T143407_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.827 0.930
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.827 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J06328.1.p C2H2 ZF 127 149
Pavir.J06328.1.p C2H2 ZF 149 175

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I 0.774
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I 0.774
BGIOSGA004888 Oryza indica BGIOSGA004888 I 0.803
Bo8g027000 Brassica oleracea Bo8g027000 I 0.827
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.827
Bra040971 Brassica rapa Bra040971 I 0.803
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I 0.803
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.827
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.827
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.807
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.827
Ca_04300 Cicer arietinum Ca_04300 I 0.827
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I 0.803
Cla016623 Citrullus lanatus Cla016623 I 0.821
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.821
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.817
F775_04088 Aegilops tauschii F775_04088 I 0.803
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.827
GLYMA10G35940 Glycine max GLYMA10G35940 I 0.797
GLYMA16G27280 Glycine max GLYMA16G27280 I 0.797
GLYMA20G31650 Glycine max GLYMA20G31650 I 0.797
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I 0.793
GRMZM2G075956 Zea mays GRMZM2G075956 I 0.803
GRMZM2G129428 Zea mays GRMZM2G129428 I 0.803
GSMUA_Achr10G15970_001 Musa acuminata GSMUA_Achr10G15970_001 I 0.768
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.827
LPERR01G33350 Leersia perrieri LPERR01G33350 I 0.803
LPERR03G34390 Leersia perrieri LPERR03G34390 I 0.763
Lus10009435.g Linum usitatissimum Lus10009435.g I 0.779
MDP0000141403 Malus domestica MDP0000141403 I 0.827
MDP0000199559 Malus domestica MDP0000199559 I 0.827
MDP0000453148 Malus domestica MDP0000453148 I 0.793
MDP0000551046 Malus domestica MDP0000551046 I 0.827
MDP0000807856 Malus domestica MDP0000807856 I 0.827
mgf000060m Mimulus guttatus mgf000060m I 0.827
MLOC_10987 Hordeum vulgare MLOC_10987 I 0.803
OB01G47470 Oryza brachyantha OB01G47470 I 0.803
OB03G47410 Oryza brachyantha OB03G47410 I 0.763
OBART01G38810 Oryza barthii OBART01G38810 I 0.803
OLONG_020555 Oryza longistaminata OLONG_020555 I 0.803
ONIVA01G43630 Oryza nivara ONIVA01G43630 I 0.803
OPUNC01G37530 Oryza punctata OPUNC01G37530 I 0.803
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.803
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I 0.803
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I 0.803
OS01G0871200 Oryza sativa OS01G0871200 I 0.803
Pavir.Ia00191 Panicum virgatum Pavir.Ia00191 I 0.763
Pavir.J01834 Panicum virgatum Pavir.J01834 I 0.763
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.827
Pavir.J14096 Panicum virgatum Pavir.J14096 I 0.803
PDK_20s1338731g001 Phoenix dactylifera PDK_20s1338731g001 I 0.768
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.817
PGSC0003DMG400026081 Solanum tuberosum PGSC0003DMG400026081 I 0.774
PK23301.1 Cannabis sativa PK23301.1 I 0.827
Pm022201 Prunus mume Pm022201 I 0.827
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I 0.797
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.827
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I 0.797
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I 0.797
Sb01g001950 Sorghum bicolor Sb01g001950 I 0.763
Sb03g041170 Sorghum bicolor Sb03g041170 I 0.803
SELMODRAFT_48272 Selaginella moellendorffii SELMODRAFT_48272 I 0.763
SELMODRAFT_58350 Selaginella moellendorffii SELMODRAFT_58350 I 0.763
SELMODRAFT_58361 Selaginella moellendorffii SELMODRAFT_58361 I 0.762
SELMODRAFT_68340 Selaginella moellendorffii SELMODRAFT_68340 I 0.762
Si001053m.g Setaria italica Si001053m.g I 0.803
Si036555m.g Setaria italica Si036555m.g I 0.763
Solyc06g065440.1 Solanum lycopersicum Solyc06g065440.1 I 0.774
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.817
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.827
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.827
STOP1 Arabidopsis thaliana AT1G34370 D 0.827
TCM_036719 Theobroma cacao TCM_036719 I 0.817
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.827
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I 0.803
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I 0.803
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I 0.803
TRIUR3_13796 Triticum urartu TRIUR3_13796 I 0.803