LCUP002077 (Lucilia cuprina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 LCUP002077 T144157_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sob
M03674_2.00 		Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY		 SELEX
Nitta et al.(2015)
sob_1 		0.823 0.983
sob
M03675_2.00 		Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN		 SELEX
Nitta et al.(2015)
sob_2 		0.823 0.983
sob
M06088_2.00 		Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC		 B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892 		0.823 0.983
sob
M06089_2.00 		Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV		 B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892 		0.823 0.983
bowl
M03676_2.00 		Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC		 SELEX
Nitta et al.(2015)
bowl_1 		0.811 0.948
bowl
M03677_2.00 		Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN		 SELEX
Nitta et al.(2015)
bowl_2 		0.811 0.948
bowl
M06090_2.00 		Drosophila melanogaster
RCTWCYGK
MCRGWAGY		 B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893 		0.811 0.948
OSR2
M04521_2.00 		Homo sapiens
NGCTACYGBD
HVCRGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_HT-SELEX 		0.795 0.896
OSR2
M08324_2.00 		Homo sapiens
NBDGCTNCTGN
NCAGNAGCHVN		 ChIP-seq
Schmitges et al.(2016)
Q8N2R0.MEME 		0.795 0.896
OSR2
M08908_2.00 		Homo sapiens
NBHNYWGCTNCTSHDB
VHDSAGNAGCWRNDVN		 Misc
Kulakovskiy et al.(2013)
OSR2_HUMAN.H11MO.0.C 		0.795 0.896
OSR2
M04522_2.00 		Homo sapiens
NGCTACTGND
HNCAGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_Methyl-HT-SELEX 		0.795 0.896
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LCUP002077-PA C2H2 ZF 453 475
LCUP002077-PA C2H2 ZF 481 503
LCUP002077-PA C2H2 ZF 509 531
LCUP002077-PA C2H2 ZF 537 559
LCUP002077-PA C2H2 ZF 565 587

Links

Other C2H2 ZF family TFs
Other Lucilia cuprina TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Afo_R003683 Aptenodytes forsteri Afo_R003683 N 0.000
ENSAPLG00000013593 Anas platyrhynchos ENSAPLG00000013593 N 0.000
ENSBTAP00000001081-D1 Bos grunniens ENSBTAP00000001081-D1 N 0.000
ENSFALG00000011624 Ficedula albicollis ENSFALG00000011624 N 0.000
ENSGACG00000009358 Gasterosteus aculeatus ENSGACG00000009358 N 0.000
ENSGALG00000015388 Gallus gallus ENSGALG00000015388 N 0.000
ENSGMOG00000009730 Gadus morhua ENSGMOG00000009730 N 0.000
ENSGMOG00000010670 Gadus morhua ENSGMOG00000010670 N 0.000
ENSLOCG00000016531 Lepisosteus oculatus ENSLOCG00000016531 N 0.000
ENSMPUG00000015726 Mustela putorius furo ENSMPUG00000015726 N 0.000
ENSOARG00000004628 Ovis aries ENSOARG00000004628 N 0.000
ENSOARG00000011272 Ovis aries ENSOARG00000011272 N 0.000
ENSONIG00000006687 Oreochromis niloticus ENSONIG00000006687 N 0.000
ENSTRUG00000007847 Takifugu rubripes ENSTRUG00000007847 N 0.000
estExt_fgenesh2_pg.C_440053 Branchiostoma floridae estExt_fgenesh2_pg.C_440053 N 0.000
estExt_fgenesh2_pg.C_440063 Branchiostoma floridae estExt_fgenesh2_pg.C_440063 N 0.000
Gfo_R012197 Geospiza fortis Gfo_R012197 N 0.000
Myotis_brandtii_ZNF683_10029662 Myotis brandtii Myotis_brandtii_ZNF683_10029662 N 0.000
Ogr18550 Ophisaurus gracilis Ogr18550 N 0.000
PRDM1 Meleagris gallopavo ENSMGAG00000013524 N 0.000
PRDM1 Anolis carolinensis ENSACAG00000005496 N 0.000
PRDM1 Taeniopygia guttata ENSTGUG00000012204 N 0.000
prdm1 Takifugu rubripes ENSTRUG00000000404 N 0.000
PRDM1 Bos taurus ENSBTAG00000000816 N 0.000
prdm1.S Xenopus laevis XB-GENE-853257 N 0.000
prdm1a Gasterosteus aculeatus ENSGACG00000001740 N 0.000
prdm1a Danio rerio ENSDARG00000002445 N 0.000
prdm1a Oryzias latipes ENSORLG00000015684 N 0.000
Pvit_09291 Pogona vitticeps Pvit_09291 N 0.000
XP_002937203 Xenopus tropicalis XP_002937203 N 0.000
ZNF683 Dasypus novemcinctus ENSDNOG00000043822 N 0.000