8496_YGL035C (Saccharomyces paradoxus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 8496_YGL035C T146012_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MIG1
M00026_2.00 		Saccharomyces cerevisiae
HCCCCRCN
NGYGGGGD		 PBM
Badis et al.(2008)
MIG1_2106 		0.827 1.000
MIG1
M01532_2.00 		Saccharomyces cerevisiae
NCYCCRBNNN
NNNVYGGRGN		 PBM
Zhu et al.(2009)
Mig1 		0.827 1.000
MIG1
M07456_2.00 		Saccharomyces cerevisiae
NCCCCRS
SYGGGGN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0337.1 		0.827 1.000
MIG1
M08523_2.00 		Saccharomyces cerevisiae
NCCCCRS
SYGGGGN		 Misc
DeBoer et al.(2011)
YGL035C_555 		0.827 1.000
MIG1
M08524_2.00 		Saccharomyces cerevisiae
CCCCRSWWWW
WWWWSYGGGG		 Misc
DeBoer et al.(2011)
YGL035C_654 		0.827 1.000
MIG1
M10391_2.00 		Saccharomyces cerevisiae
NHCCCCRSDTWWWWDDM
KHHWWWWAHSYGGGGDN		 Transfac
Matys et al.(2006)
F$MIG1_01 		0.827 1.000
MIG1
M10392_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MIG1_03 		0.827 1.000
MIG1
M10393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MIG1_Q6 		0.827 1.000
cre-1
M01198_2.00 		Neurospora crassa
CCCCRNNN
NNNYGGGG		 PBM
Lambert et al.(2019)
pTH8711 		0.781 0.761
RO3G_16591
M01442_2.00 		Rhizopus oryzae
NCCCCRCDNN
NNHGYGGGGN		 PBM
Najafabadi et al.(2015a)
pTH10231 		0.758 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
8496_YGL035C C2H2 ZF 38 60
8496_YGL035C C2H2 ZF 66 90

Links

Other C2H2 ZF family TFs
Other Saccharomyces paradoxus TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29848.m004632 Ricinus communis 29848.m004632 I
Bo9g171490 Brassica oleracea Bo9g171490 I
Bostr.23997s0014 Boechera stricta Bostr.23997s0014 I
Bostr.29827s0278 Boechera stricta Bostr.29827s0278 I
Bra008985 Brassica rapa Bra008985 I
Cagra.1110s0005 Capsella grandiflora Cagra.1110s0005 I
Carubv10002040m.g Capsella rubella Carubv10002040m.g I
Carubv10003042m.g Capsella rubella Carubv10003042m.g I
Carubv10003050m.g Capsella rubella Carubv10003050m.g I
cassava10120.m1 Manihot esculenta cassava10120.m1 I
cassava30505.valid.m1 Manihot esculenta cassava30505.valid.m1 I
Ca_01764 Cicer arietinum Ca_01764 I
Ca_09050 Cicer arietinum Ca_09050 I
Ciclev10009526m.g Citrus clementina Ciclev10009526m.g I
Cla012914 Citrullus lanatus Cla012914 I
evm.TU.supercontig_259.2 Carica papaya evm.TU.supercontig_259.2 I
gene11636-v1.0-hybrid Fragaria vesca gene11636-v1.0-hybrid I
GLYMA04G07140 Glycine max GLYMA04G07140 I
GLYMA06G07240 Glycine max GLYMA06G07240 I
GLYMA17G31900 Glycine max GLYMA17G31900 I
Gorai.001G033200 Gossypium raimondii Gorai.001G033200 I
Gorai.004G292600 Gossypium raimondii Gorai.004G292600 I
Gorai.010G114800 Gossypium raimondii Gorai.010G114800 I
LjSGA_019003.1 Lotus japonicus LjSGA_019003.1 I
Lus10002015.g Linum usitatissimum Lus10002015.g I
Lus10002912.g Linum usitatissimum Lus10002912.g I
MDP0000178263 Malus domestica MDP0000178263 I
MDP0000287350 Malus domestica MDP0000287350 I
mgf017744m Mimulus guttatus mgf017744m I
MTR_1g012470 Medicago truncatula MTR_1g012470 I
MTR_3g107380 Medicago truncatula MTR_3g107380 I
orange1.1g028913m.g Citrus sinensis orange1.1g028913m.g I
Pm004616 Prunus mume Pm004616 I
POPTR_0006s06870 Populus trichocarpa POPTR_0006s06870 I
POPTR_0006s26990 Populus trichocarpa POPTR_0006s26990 I
POPTR_0018s01680 Populus trichocarpa POPTR_0018s01680 I
PRUPE_ppa023908mg Prunus persica PRUPE_ppa023908mg I
SapurV1A.0043s0690 Salix purpurea SapurV1A.0043s0690 I
SapurV1A.0192s0020 Salix purpurea SapurV1A.0192s0020 I
SapurV1A.0198s0340 Salix purpurea SapurV1A.0198s0340 N
SHN2 Arabidopsis thaliana AT5G11190 D
SHN3 Arabidopsis lyrata Al_scaffold_0006_1028 I
TCM_037007 Theobroma cacao TCM_037007 I
Thhalv10015363m.g Eutrema salsugineum Thhalv10015363m.g I
VIT_04s0008g05440 Vitis vinifera VIT_04s0008g05440 I