chr4.CM0042.1850.nd (Lotus japonicus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 chr4.CM0042.1850.nd T146059_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0042.1850.nd C2H2 ZF 14 35
chr4.CM0042.1850.nd C2H2 ZF 36 59

Links

Other C2H2 ZF family TFs
Other Lotus japonicus TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_002_01079 Aquilegia coerulea Aquca_002_01079 N
AT1G18560 Arabidopsis thaliana AT1G18560 N
Bo5g083750 Brassica oleracea Bo5g083750 N
Bostr.7128s0463 Boechera stricta Bostr.7128s0463 N
Cagra.0909s0036 Capsella grandiflora Cagra.0909s0036 N
Carubv10008481m.g Capsella rubella Carubv10008481m.g N
cassava37498.valid.m1 Manihot esculenta cassava37498.valid.m1 N
cassava37499.valid.m1 Manihot esculenta cassava37499.valid.m1 N
cassava37500.valid.m1 Manihot esculenta cassava37500.valid.m1 N
Ciclev10019100m.g Citrus clementina Ciclev10019100m.g N
Cucsa.090680 Cucumis sativus Cucsa.090680 N
Eucgr.B00689 Eucalyptus grandis Eucgr.B00689 N
gene26197-v1.0-hybrid Fragaria vesca gene26197-v1.0-hybrid N
GLYMA05G07875 Glycine max GLYMA05G07875 N
GLYMA17G13141 Glycine max GLYMA17G13141 N
Gorai.007G008000 Gossypium raimondii Gorai.007G008000 N
LjSGA_062426.1 Lotus japonicus LjSGA_062426.1 N
MDP0000155004 Malus domestica MDP0000155004 N
MDP0000637083 Malus domestica MDP0000637083 N
orange1.1g008805m.g Citrus sinensis orange1.1g008805m.g N
PDK_20s1489551g002 Phoenix dactylifera PDK_20s1489551g002 N
PGSC0003DMG400005619 Solanum tuberosum PGSC0003DMG400005619 N
PK14806.1 Cannabis sativa PK14806.1 N
Pm030213 Prunus mume Pm030213 N
POPTR_0012s05580 Populus trichocarpa POPTR_0012s05580 N
PRUPE_ppa002398mg Prunus persica PRUPE_ppa002398mg N
SapurV1A.0851s0040 Salix purpurea SapurV1A.0851s0040 N
SapurV1A.3382s0020 Salix purpurea SapurV1A.3382s0020 N
Solyc03g119830.2 Solanum lycopersicum Solyc03g119830.2 N
TCM_012243 Theobroma cacao TCM_012243 N
Thhalv10006990m.g Eutrema salsugineum Thhalv10006990m.g N
VIT_17s0000g04250 Vitis vinifera VIT_17s0000g04250 N