gene26197-v1.0-hybrid (Fragaria vesca)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 gene26197-v1.0-hybrid T028307_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna26197.1-v1.0-hybrid BED ZF 60 102

Links

Other BED ZF family TFs
Other Fragaria vesca TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0012s05580 Populus trichocarpa POPTR_0012s05580 N 0.953
PRUPE_ppa002398mg Prunus persica PRUPE_ppa002398mg N 0.953
VIT_17s0000g04250 Vitis vinifera VIT_17s0000g04250 N 0.953
Pm030213 Prunus mume Pm030213 N 0.953
Cucsa.090680 Cucumis sativus Cucsa.090680 N 0.953
Ciclev10019100m.g Citrus clementina Ciclev10019100m.g N 0.953
MDP0000637083 Malus domestica MDP0000637083 N 0.953
orange1.1g008805m.g Citrus sinensis orange1.1g008805m.g N 0.953
SapurV1A.0851s0040 Salix purpurea SapurV1A.0851s0040 N 0.953
SapurV1A.3382s0020 Salix purpurea SapurV1A.3382s0020 N 0.953
PK14806.1 Cannabis sativa PK14806.1 N 0.953
GLYMA05G07875 Glycine max GLYMA05G07875 N 0.930
GLYMA17G13141 Glycine max GLYMA17G13141 N 0.930
cassava37498.valid.m1 Manihot esculenta cassava37498.valid.m1 N 0.930
cassava37499.valid.m1 Manihot esculenta cassava37499.valid.m1 N 0.930
cassava37500.valid.m1 Manihot esculenta cassava37500.valid.m1 N 0.930
MDP0000155004 Malus domestica MDP0000155004 N 0.930
LjSGA_062426.1 Lotus japonicus LjSGA_062426.1 N 0.930
TCM_012243 Theobroma cacao TCM_012243 N 0.907
Gorai.007G008000 Gossypium raimondii Gorai.007G008000 N 0.907
PDK_20s1489551g002 Phoenix dactylifera PDK_20s1489551g002 N 0.884
AMTR_s00024p00250640 Amborella trichopoda AMTR_s00024p00250640 N 0.860
AT1G18560 Arabidopsis thaliana AT1G18560 N 0.860
PGSC0003DMG400005619 Solanum tuberosum PGSC0003DMG400005619 N 0.860
Solyc03g119830.2 Solanum lycopersicum Solyc03g119830.2 N 0.860
Bostr.7128s0463 Boechera stricta Bostr.7128s0463 N 0.860
Cagra.0909s0036 Capsella grandiflora Cagra.0909s0036 N 0.860
Carubv10008481m.g Capsella rubella Carubv10008481m.g N 0.860
Eucgr.B00689 Eucalyptus grandis Eucgr.B00689 N 0.860
Thhalv10006990m.g Eutrema salsugineum Thhalv10006990m.g N 0.860
Aquca_002_01079 Aquilegia coerulea Aquca_002_01079 N 0.791
Bo5g083750 Brassica oleracea Bo5g083750 N 0.767
Bo8g104310 Brassica oleracea Bo8g104310 N 0.767