Hba_09212 (Heterorhabditis bacteriophora)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Hba_09212 T153747_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
blmp-1
M08103_2.00 		Caenorhabditis elegans
YTYTCHYTTTY
RAAARDGARAR		 ChIP-seq
Mathelier et al.(2014)
MA0537.1 		0.799 0.912
blmp-1
M08195_2.00 		Caenorhabditis elegans
VACTTTCDCY
RGHGAAAGTB		 ChIP-seq
Contrino et al.(2012)
Mw137 		0.799 0.912
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Hba_09212 C2H2 ZF 936 958
Hba_09212 C2H2 ZF 964 986
Hba_09212 C2H2 ZF 992 1014
Hba_09212 C2H2 ZF 1020 1042
Hba_09212 C2H2 ZF 1048 1069

Links

Other C2H2 ZF family TFs
Other Heterorhabditis bacteriophora TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29333.m001059 Ricinus communis 29333.m001059 N
Bo1g150420 Brassica oleracea Bo1g150420 N
Bo3g060160 Brassica oleracea Bo3g060160 N
Bo5g145140 Brassica oleracea Bo5g145140 N
Bo9g176100 Brassica oleracea Bo9g176100 N
Bostr.13129s0320 Boechera stricta Bostr.13129s0320 N
Bostr.2570s0105 Boechera stricta Bostr.2570s0105 N
Bra001164 Brassica rapa Bra001164 N
Bra040529 Brassica rapa Bra040529 N
Cagra.2108s0005 Capsella grandiflora Cagra.2108s0005 N
Cagra.2117s0012 Capsella grandiflora Cagra.2117s0012 N
Carubv10001713m.g Capsella rubella Carubv10001713m.g N
Carubv10014086m.g Capsella rubella Carubv10014086m.g N
Ca_00866 Cicer arietinum Ca_00866 N
Ca_14455 Cicer arietinum Ca_14455 N
chr1.CM0361.430.nc Lotus japonicus chr1.CM0361.430.nc N
chr5.CM0571.20.nd Lotus japonicus chr5.CM0571.20.nd N
Ciclev10012232m.g Citrus clementina Ciclev10012232m.g N
Cla017884 Citrullus lanatus Cla017884 N
Cucsa.241980 Cucumis sativus Cucsa.241980 N
Eucgr.A02570 Eucalyptus grandis Eucgr.A02570 N
evm.TU.supercontig_104.9 Carica papaya evm.TU.supercontig_104.9 N
gene18295-v1.0-hybrid Fragaria vesca gene18295-v1.0-hybrid N
GLYMA02G35190 Glycine max GLYMA02G35190 N
GLYMA03G36140 Glycine max GLYMA03G36140 N
GLYMA10G10240 Glycine max GLYMA10G10240 N
GLYMA19G38800 Glycine max GLYMA19G38800 N
Gorai.002G234400 Gossypium raimondii Gorai.002G234400 N
Gorai.007G363800 Gossypium raimondii Gorai.007G363800 N
Lus10013592.g Linum usitatissimum Lus10013592.g N
Lus10021259.g Linum usitatissimum Lus10021259.g N
MDP0000129029 Malus domestica MDP0000129029 N
MDP0000183865 Malus domestica MDP0000183865 I
MDP0000375005 Malus domestica MDP0000375005 N
MDP0000588222 Malus domestica MDP0000588222 N
MDP0000785523 Malus domestica MDP0000785523 N
MDP0000948645 Malus domestica MDP0000948645 N
MTR_1g056530 Medicago truncatula MTR_1g056530 N
MTR_7g106450 Medicago truncatula MTR_7g106450 N
NF-YA10 Arabidopsis lyrata scaffold_600636.1 N
NFYA10 Arabidopsis thaliana AT5G06510 N
orange1.1g021081m.g Citrus sinensis orange1.1g021081m.g N
PK26326.1 Cannabis sativa PK26326.1 N
Pm026038 Prunus mume Pm026038 N
POPTR_0006s21640 Populus trichocarpa POPTR_0006s21640 N
POPTR_0016s06860 Populus trichocarpa POPTR_0016s06860 N
PRUPE_ppa017366mg Prunus persica PRUPE_ppa017366mg N
SapurV1A.0258s0010 Salix purpurea SapurV1A.0258s0010 N
SapurV1A.0980s0030 Salix purpurea SapurV1A.0980s0030 N
SapurV1A.1209s0040 Salix purpurea SapurV1A.1209s0040 N
TCM_022984 Theobroma cacao TCM_022984 N
Thhalv10014346m.g Eutrema salsugineum Thhalv10014346m.g N
Thhalv10021244m.g Eutrema salsugineum Thhalv10021244m.g N
UNE8 Arabidopsis lyrata fgenesh2_kg.3__563__AT3G05690.1 N
UNE8 Arabidopsis thaliana AT3G05690 N
VIT_08s0032g01190 Vitis vinifera VIT_08s0032g01190 N