nLs.2.1.2.g04320 (Litomosoides sigmodontis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nLs.2.1.2.g04320 T155331_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pat-9
M00620_2.00 		Caenorhabditis elegans
NDKTKTAAHN
NDTTAMAMHN		 PBM
Narasimhan et al.(2015)
pTH10808 		0.786 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t04320-RA C2H2 ZF 190 212
nLs.2.1.2.t04320-RA C2H2 ZF 218 240

Links

Other C2H2 ZF family TFs
Other Litomosoides sigmodontis TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000873 Ricinus communis 28152.m000873 N
cassava12724.valid.m1 Manihot esculenta cassava12724.valid.m1 N
Eucgr.G01324 Eucalyptus grandis Eucgr.G01324 N
MDP0000133930 Malus domestica MDP0000133930 N
MDP0000246432 Malus domestica MDP0000246432 N
Pm021242 Prunus mume Pm021242 N
PRUPE_ppa023106mg Prunus persica PRUPE_ppa023106mg N