LIN28A (Sus scrofa)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSSSCG00000003557 T164788_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.864 0.864
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.864 0.864
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000003860 CSD 36 108

Links

Other CSD family TFs
Other Sus scrofa TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29912.m005354 Ricinus communis 29912.m005354 I 0.000
29983.m003125 Ricinus communis 29983.m003125 I 0.000
30190.m010767 Ricinus communis 30190.m010767 I 0.000
AMTR_s00021p00209320 Amborella trichopoda AMTR_s00021p00209320 I 0.000
ANAC010 Arabidopsis lyrata scaffold_103183.1 I 0.000
ANAC010 Vitis vinifera VIT_10s0003g00350 I 0.000
ANAC073 Vitis vinifera VIT_12s0028g03050 I 0.000
anac075 Arabidopsis thaliana AT4G29230 D 0.000
anac075 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001013 I 0.000
Aquca_001_00211 Aquilegia coerulea Aquca_001_00211 I 0.000
Aquca_036_00051 Aquilegia coerulea Aquca_036_00051 I 0.000
BGIOSGA001044 Oryza indica BGIOSGA001044 I 0.000
BGIOSGA002220 Oryza indica BGIOSGA002220 I 0.000
BGIOSGA018654 Oryza indica BGIOSGA018654 I 0.000
BGIOSGA020356 Oryza indica BGIOSGA020356 I 0.000
BGIOSGA021039 Oryza indica BGIOSGA021039 I 0.000
Bo1g016630 Brassica oleracea Bo1g016630 I 0.000
Bo5g055990 Brassica oleracea Bo5g055990 I 0.000
Bo7g047040 Brassica oleracea Bo7g047040 I 0.000
Bo7g113660 Brassica oleracea Bo7g113660 I 0.000
Bostr.15697s0168 Boechera stricta Bostr.15697s0168 I 0.000
Bostr.7867s0767 Boechera stricta Bostr.7867s0767 I 0.000
Bra011090 Brassica rapa Bra011090 I 0.000
Bra024152 Brassica rapa Bra024152 I 0.000
Bra030099 Brassica rapa Bra030099 I 0.000
Bra032910 Brassica rapa Bra032910 I 0.000
BRADI2G05700 Brachypodium distachyon BRADI2G05700 I 0.000
BRADI2G33307 Brachypodium distachyon BRADI2G33307 I 0.000
BRADI2G46197 Brachypodium distachyon BRADI2G46197 I 0.000
Cagra.0495s0057 Capsella grandiflora Cagra.0495s0057 I 0.000
Cagra.1822s0012 Capsella grandiflora Cagra.1822s0012 I 0.000
Carubv10004602m.g Capsella rubella Carubv10004602m.g I 0.000
Carubv10009638m.g Capsella rubella Carubv10009638m.g I 0.000
cassava11584.m1 Manihot esculenta cassava11584.m1 I 0.000
cassava1596.valid.m1 Manihot esculenta cassava1596.valid.m1 I 0.000
cassava17166.m1 Manihot esculenta cassava17166.m1 I 0.000
cassava44586.m1 Manihot esculenta cassava44586.m1 I 0.000
cassava46566.m1 Manihot esculenta cassava46566.m1 I 0.000
Ca_02457 Cicer arietinum Ca_02457 I 0.000
Ca_05913 Cicer arietinum Ca_05913 I 0.000
Ca_06348 Cicer arietinum Ca_06348 I 0.000
Ca_11273 Cicer arietinum Ca_11273 I 0.000
chr2.CM0749.410.nc Lotus japonicus chr2.CM0749.410.nc I 0.000
chr4.CM0617.60.nd Lotus japonicus chr4.CM0617.60.nd I 0.000
Ciclev10010579m.g Citrus clementina Ciclev10010579m.g I 0.000
Ciclev10017822m.g Citrus clementina Ciclev10017822m.g I 0.000
Cla011431 Citrullus lanatus Cla011431 I 0.000
Cucsa.116800 Cucumis sativus Cucsa.116800 I 0.000
Cucsa.126960 Cucumis sativus Cucsa.126960 I 0.000
Cucsa.288680 Cucumis sativus Cucsa.288680 I 0.000
Eucgr.C00958 Eucalyptus grandis Eucgr.C00958 I 0.000
Eucgr.D00591 Eucalyptus grandis Eucgr.D00591 I 0.000
Eucgr.K01061 Eucalyptus grandis Eucgr.K01061 I 0.000
evm.TU.supercontig_2586.1 Carica papaya evm.TU.supercontig_2586.1 I 0.000
evm.TU.supercontig_78.40 Carica papaya evm.TU.supercontig_78.40 I 0.000
evm.TU.supercontig_83.99 Carica papaya evm.TU.supercontig_83.99 I 0.000
F775_07141 Aegilops tauschii F775_07141 I 0.000
F775_16052 Aegilops tauschii F775_16052 I 0.000
gene11344-v1.0-hybrid Fragaria vesca gene11344-v1.0-hybrid I 0.000
gene29766-v1.0-hybrid Fragaria vesca gene29766-v1.0-hybrid I 0.000
GLYMA01G00880 Glycine max GLYMA01G00880 I 0.000
GLYMA01G22510 Glycine max GLYMA01G22510 I 0.000
GLYMA02G11140 Glycine max GLYMA02G11140 I 0.000
GLYMA05G36031 Glycine max GLYMA05G36031 I 0.000
GLYMA06G44250 Glycine max GLYMA06G44250 I 0.000
GLYMA07G15180 Glycine max GLYMA07G15180 I 0.000
GLYMA07G32250 Glycine max GLYMA07G32250 I 0.000
GLYMA08G03590 Glycine max GLYMA08G03590 I 0.000
GLYMA12G13710 Glycine max GLYMA12G13710 I 0.000
GLYMA12G33460 Glycine max GLYMA12G33460 I 0.000
GLYMA13G24320 Glycine max GLYMA13G24320 I 0.000
GLYMA13G36980 Glycine max GLYMA13G36980 I 0.000
GLYMA20G32690 Glycine max GLYMA20G32690 I 0.000
Gorai.008G155200 Gossypium raimondii Gorai.008G155200 I 0.000
Gorai.008G186300 Gossypium raimondii Gorai.008G186300 I 0.000
Gorai.009G028900 Gossypium raimondii Gorai.009G028900 I 0.000
Gorai.009G166300 Gossypium raimondii Gorai.009G166300 I 0.000
Gorai.010G078900 Gossypium raimondii Gorai.010G078900 I 0.000
Gorai.010G157600 Gossypium raimondii Gorai.010G157600 I 0.000
GRMZM2G027309 Zea mays GRMZM2G027309 I 0.000
GRMZM2G058518 Zea mays GRMZM2G058518 I 0.000
GRMZM2G078954 Zea mays GRMZM2G078954 I 0.000
GRMZM2G086768 Zea mays GRMZM2G086768 I 0.000
GRMZM2G112681 Zea mays GRMZM2G112681 I 0.000
GRMZM2G166721 Zea mays GRMZM2G166721 I 0.000
GRMZM2G379608 Zea mays GRMZM2G379608 I 0.000
GSMUA_Achr2G16590_001 Musa acuminata GSMUA_Achr2G16590_001 I 0.000
GSMUA_Achr3G07330_001 Musa acuminata GSMUA_Achr3G07330_001 I 0.000
GSMUA_Achr4G02730_001 Musa acuminata GSMUA_Achr4G02730_001 I 0.000
GSMUA_Achr4G30940_001 Musa acuminata GSMUA_Achr4G30940_001 I 0.000
GSMUA_Achr6G05480_001 Musa acuminata GSMUA_Achr6G05480_001 I 0.000
GSMUA_Achr6G27000_001 Musa acuminata GSMUA_Achr6G27000_001 I 0.000
GSMUA_Achr7G09510_001 Musa acuminata GSMUA_Achr7G09510_001 I 0.000
GSMUA_AchrUn_randomG28610_001 Musa acuminata GSMUA_AchrUn_randomG28610_001 I 0.000
gw1.251.65.1 Physcomitrella patens gw1.251.65.1 I 0.000
LPERR01G05530 Leersia perrieri LPERR01G05530 I 0.000
LPERR01G22300 Leersia perrieri LPERR01G22300 I 0.000
LPERR05G05170 Leersia perrieri LPERR05G05170 I 0.000
LPERR05G21400 Leersia perrieri LPERR05G21400 I 0.000
Lus10013967.g Linum usitatissimum Lus10013967.g I 0.000
Lus10015392.g Linum usitatissimum Lus10015392.g I 0.000
MDP0000124509 Malus domestica MDP0000124509 I 0.000
MDP0000276278 Malus domestica MDP0000276278 I 0.000
MDP0000309351 Malus domestica MDP0000309351 I 0.000
MLOC_66537 Hordeum vulgare MLOC_66537 I 0.000
MLOC_75795 Hordeum vulgare MLOC_75795 I 0.000
MTR_1g093670 Medicago truncatula MTR_1g093670 I 0.000
MTR_1g093680 Medicago truncatula MTR_1g093680 I 0.000
MTR_2g090735 Medicago truncatula MTR_2g090735 I 0.000
MTR_4g078875 Medicago truncatula MTR_4g078875 I 0.000
MTR_4g088245 Medicago truncatula MTR_4g088245 I 0.000
MTR_8g069160 Medicago truncatula MTR_8g069160 I 0.000
MTR_8g102240 Medicago truncatula MTR_8g102240 I 0.000
NAC010 Arabidopsis thaliana AT1G28470 D 0.000
OB01G15780 Oryza brachyantha OB01G15780 I 0.000
OB05G15600 Oryza brachyantha OB05G15600 I 0.000
OB05G33280 Oryza brachyantha OB05G33280 I 0.000
OBART01G05840 Oryza barthii OBART01G05840 I 0.000
OBART05G06140 Oryza barthii OBART05G06140 I 0.000
OBART05G25770 Oryza barthii OBART05G25770 I 0.000
OBART06G18520 Oryza barthii OBART06G18520 I 0.000
OGLUM01G06390 Oryza glumaepatula OGLUM01G06390 I 0.000
OGLUM01G29870 Oryza glumaepatula OGLUM01G29870 I 0.000
OGLUM05G06420 Oryza glumaepatula OGLUM05G06420 I 0.000
OGLUM05G27400 Oryza glumaepatula OGLUM05G27400 I 0.000
OGLUM06G19630 Oryza glumaepatula OGLUM06G19630 I 0.000
OLONG_008708 Oryza longistaminata OLONG_008708 I 0.000
OLONG_014922 Oryza longistaminata OLONG_014922 I 0.000
OLONG_018487 Oryza longistaminata OLONG_018487 I 0.000
OLONG_021085 Oryza longistaminata OLONG_021085 I 0.000
OMERI01G23720 Oryza meridionalis OMERI01G23720 I 0.000
OMERI02G35510 Oryza meridionalis OMERI02G35510 I 0.000
OMERI06G18870 Oryza meridionalis OMERI06G18870 I 0.000
ONIVA01G06690 Oryza nivara ONIVA01G06690 I 0.000
ONIVA01G29490 Oryza nivara ONIVA01G29490 I 0.000
ONIVA05G06750 Oryza nivara ONIVA05G06750 I 0.000
ONIVA05G27670 Oryza nivara ONIVA05G27670 I 0.000
ONIVA06G22200 Oryza nivara ONIVA06G22200 I 0.000
OPUNC01G05680 Oryza punctata OPUNC01G05680 I 0.000
OPUNC01G25960 Oryza punctata OPUNC01G25960 I 0.000
OPUNC05G05600 Oryza punctata OPUNC05G05600 I 0.000
OPUNC05G23360 Oryza punctata OPUNC05G23360 I 0.000
orange1.1g012118m.g Citrus sinensis orange1.1g012118m.g I 0.000
orange1.1g021635m.g Citrus sinensis orange1.1g021635m.g I 0.000
ORGLA01G0055000 Oryza glaberrima ORGLA01G0055000 I 0.000
ORGLA01G0213300 Oryza glaberrima ORGLA01G0213300 I 0.000
ORGLA05G0055000 Oryza glaberrima ORGLA05G0055000 I 0.000
ORGLA05G0222500 Oryza glaberrima ORGLA05G0222500 I 0.000
ORGLA06G0153500 Oryza glaberrima ORGLA06G0153500 I 0.000
ORUFI01G06380 Oryza rufipogon ORUFI01G06380 I 0.000
ORUFI01G29010 Oryza rufipogon ORUFI01G29010 I 0.000
ORUFI05G06530 Oryza rufipogon ORUFI05G06530 I 0.000
ORUFI05G27670 Oryza rufipogon ORUFI05G27670 I 0.000
ORUFI06G19520 Oryza rufipogon ORUFI06G19520 I 0.000
OS01G0191300 Oryza sativa OS01G0191300 I 0.000
OS05G0194500 Oryza sativa OS05G0194500 I 0.000
OS05G0563000 Oryza sativa OS05G0563000 I 0.000
OS06G0560300 Oryza sativa OS06G0560300 I 0.000
Pavir.Eb00261 Panicum virgatum Pavir.Eb00261 I 0.000
Pavir.Eb02718 Panicum virgatum Pavir.Eb02718 I 0.000
Pavir.J05241 Panicum virgatum Pavir.J05241 I 0.000
Pavir.J13205 Panicum virgatum Pavir.J13205 I 0.000
Pavir.J36494 Panicum virgatum Pavir.J36494 I 0.000
PDK_20s1410211g002 Phoenix dactylifera PDK_20s1410211g002 I 0.000
PGSC0003DMG400009381 Solanum tuberosum PGSC0003DMG400009381 I 0.000
PGSC0003DMG400016896 Solanum tuberosum PGSC0003DMG400016896 I 0.000
PK11990.1 Cannabis sativa PK11990.1 D 0.000
PK25812.1 Cannabis sativa PK25812.1 I 0.000
PK27085.1 Cannabis sativa PK27085.1 D 0.000
PK28347.1 Cannabis sativa PK28347.1 I 0.000
Pm010104 Prunus mume Pm010104 I 0.000
Pm027280 Prunus mume Pm027280 I 0.000
POPTR_0006s15740 Populus trichocarpa POPTR_0006s15740 I 0.000
POPTR_0017s04800 Populus trichocarpa POPTR_0017s04800 I 0.000
POPTR_0018s06790 Populus trichocarpa POPTR_0018s06790 I 0.000
PRUPE_ppa004775mg Prunus persica PRUPE_ppa004775mg I 0.000
PRUPE_ppa008828mg Prunus persica PRUPE_ppa008828mg I 0.000
SapurV1A.0079s0500 Salix purpurea SapurV1A.0079s0500 I 0.000
SapurV1A.0212s0190 Salix purpurea SapurV1A.0212s0190 I 0.000
SapurV1A.1259s0030 Salix purpurea SapurV1A.1259s0030 I 0.000
SapurV1A.1828s0030 Salix purpurea SapurV1A.1828s0030 I 0.000
SapurV1A.2554s0030 Salix purpurea SapurV1A.2554s0030 I 0.000
SapurV1A.3101s0030 Salix purpurea SapurV1A.3101s0030 I 0.000
Sb03g003170 Sorghum bicolor Sb03g003170 I 0.000
Sb03g030750 Sorghum bicolor Sb03g030750 I 0.000
Sb09g006015 Sorghum bicolor Sb09g006015 I 0.000
Sb09g006018 Sorghum bicolor Sb09g006018 I 0.000
Sb10g009670 Sorghum bicolor Sb10g009670 I 0.000
Si001527m.g Setaria italica Si001527m.g I 0.000
Si002301m.g Setaria italica Si002301m.g I 0.000
Si024889m.g Setaria italica Si024889m.g I 0.000
SOG1 Vitis vinifera VIT_01s0011g02990 I 0.000
Solyc05g026180.1 Solanum lycopersicum Solyc05g026180.1 I 0.000
Solyc07g053590.2 Solanum lycopersicum Solyc07g053590.2 I 0.000
TCM_008229 Theobroma cacao TCM_008229 I 0.000
TCM_011869 Theobroma cacao TCM_011869 I 0.000
TCM_029798 Theobroma cacao TCM_029798 I 0.000
TCM_037747 Theobroma cacao TCM_037747 I 0.000
Thhalv10008249m.g Eutrema salsugineum Thhalv10008249m.g I 0.000
Thhalv10024980m.g Eutrema salsugineum Thhalv10024980m.g I 0.000
TRAES3BF097400030CFD_g Triticum aestivum TRAES3BF097400030CFD_g I 0.000
Traes_3AL_41AC2099E Triticum aestivum Traes_3AL_41AC2099E I 0.000
Traes_3AL_41AC2099E1 Triticum aestivum Traes_3AL_41AC2099E1 I 0.000
Traes_3DL_C686CE2E3 Triticum aestivum Traes_3DL_C686CE2E3 I 0.000
TRIUR3_27393 Triticum urartu TRIUR3_27393 I 0.000
TRIUR3_31341 Triticum urartu TRIUR3_31341 I 0.000
TRIUR3_33147 Triticum urartu TRIUR3_33147 I 0.000
VIT_11s0016g02880 Vitis vinifera VIT_11s0016g02880 I 0.000