si:ch1073-284b18.2 (Takifugu rubripes)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSTRUG00000006069 T164821_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.894 0.894
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.894 0.894
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000014746 CSD 40 112
ENSTRUP00000014747 CSD 39 111

Links

Other CSD family TFs
Other Takifugu rubripes TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29912.m005354 Ricinus communis 29912.m005354 I 0.000
29917.m002016 Ricinus communis 29917.m002016 I 0.000
29983.m003125 Ricinus communis 29983.m003125 I 0.000
AMTR_s00021p00209320 Amborella trichopoda AMTR_s00021p00209320 I 0.000
AMTR_s00049p00217400 Amborella trichopoda AMTR_s00049p00217400 I 0.000
AMTR_s00060p00054700 Amborella trichopoda AMTR_s00060p00054700 I 0.000
ANAC010 Arabidopsis lyrata scaffold_103183.1 I 0.000
ANAC073 Arabidopsis lyrata Al_scaffold_0007_1273 I 0.000
ANAC073 Vitis vinifera VIT_12s0028g03050 I 0.000
anac075 Arabidopsis thaliana AT4G29230 D 0.000
anac075 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001013 I 0.000
Aquca_036_00051 Aquilegia coerulea Aquca_036_00051 I 0.000
Aquca_054_00006 Aquilegia coerulea Aquca_054_00006 I 0.000
BGIOSGA002220 Oryza indica BGIOSGA002220 I 0.000
BGIOSGA006133 Oryza indica BGIOSGA006133 N 0.000
BGIOSGA018654 Oryza indica BGIOSGA018654 I 0.000
BGIOSGA022664 Oryza indica BGIOSGA022664 I 0.000
Bo1g016630 Brassica oleracea Bo1g016630 I 0.000
Bo1g017410 Brassica oleracea Bo1g017410 I 0.000
Bo5g055990 Brassica oleracea Bo5g055990 I 0.000
Bo7g047040 Brassica oleracea Bo7g047040 I 0.000
Bo7g113660 Brassica oleracea Bo7g113660 I 0.000
Bostr.7867s0691 Boechera stricta Bostr.7867s0691 I 0.000
Bostr.7867s0767 Boechera stricta Bostr.7867s0767 I 0.000
Bra011034 Brassica rapa Bra011034 I 0.000
Bra011090 Brassica rapa Bra011090 I 0.000
Bra024152 Brassica rapa Bra024152 I 0.000
Bra024197 Brassica rapa Bra024197 I 0.000
Bra030099 Brassica rapa Bra030099 I 0.000
Bra032910 Brassica rapa Bra032910 I 0.000
BRADI1G43840 Brachypodium distachyon BRADI1G43840 I 0.000
BRADI2G05700 Brachypodium distachyon BRADI2G05700 I 0.000
BRADI2G33307 Brachypodium distachyon BRADI2G33307 I 0.000
BRADI3G47627 Brachypodium distachyon BRADI3G47627 I 0.000
BRADI5G13450 Brachypodium distachyon BRADI5G13450 N 0.000
Cagra.0495s0057 Capsella grandiflora Cagra.0495s0057 I 0.000
Cagra.1225s0041 Capsella grandiflora Cagra.1225s0041 I 0.000
Cagra.1822s0012 Capsella grandiflora Cagra.1822s0012 I 0.000
Carubv10004602m.g Capsella rubella Carubv10004602m.g I 0.000
Carubv10005324m.g Capsella rubella Carubv10005324m.g I 0.000
Carubv10009638m.g Capsella rubella Carubv10009638m.g I 0.000
cassava11584.m1 Manihot esculenta cassava11584.m1 I 0.000
cassava14633.m1 Manihot esculenta cassava14633.m1 I 0.000
cassava17166.m1 Manihot esculenta cassava17166.m1 I 0.000
cassava3690.m1 Manihot esculenta cassava3690.m1 I 0.000
cassava44586.m1 Manihot esculenta cassava44586.m1 I 0.000
cassava46566.m1 Manihot esculenta cassava46566.m1 I 0.000
Ca_02457 Cicer arietinum Ca_02457 I 0.000
Ca_06348 Cicer arietinum Ca_06348 I 0.000
Ca_11273 Cicer arietinum Ca_11273 I 0.000
Ca_23230 Cicer arietinum Ca_23230 N 0.000
chr1.CM0001.370.nd Lotus japonicus chr1.CM0001.370.nd N 0.000
chr2.CM0749.410.nc Lotus japonicus chr2.CM0749.410.nc I 0.000
chr3.CM0160.860.nd Lotus japonicus chr3.CM0160.860.nd I 0.000
chr6.LjT04E21.30.nc Lotus japonicus chr6.LjT04E21.30.nc I 0.000
Ciclev10015507m.g Citrus clementina Ciclev10015507m.g I 0.000
Ciclev10015976m.g Citrus clementina Ciclev10015976m.g I 0.000
Ciclev10017822m.g Citrus clementina Ciclev10017822m.g I 0.000
Cla004701 Citrullus lanatus Cla004701 I 0.000
Cla011431 Citrullus lanatus Cla011431 I 0.000
Cucsa.011210 Cucumis sativus Cucsa.011210 I 0.000
Cucsa.046530 Cucumis sativus Cucsa.046530 I 0.000
Cucsa.288680 Cucumis sativus Cucsa.288680 I 0.000
Eucgr.C00958 Eucalyptus grandis Eucgr.C00958 I 0.000
Eucgr.D00591 Eucalyptus grandis Eucgr.D00591 I 0.000
Eucgr.D00592 Eucalyptus grandis Eucgr.D00592 I 0.000
Eucgr.D00594 Eucalyptus grandis Eucgr.D00594 I 0.000
Eucgr.G02349 Eucalyptus grandis Eucgr.G02349 I 0.000
Eucgr.J02254 Eucalyptus grandis Eucgr.J02254 I 0.000
Eucgr.K01061 Eucalyptus grandis Eucgr.K01061 I 0.000
evm.TU.supercontig_78.40 Carica papaya evm.TU.supercontig_78.40 I 0.000
evm.TU.supercontig_83.99 Carica papaya evm.TU.supercontig_83.99 I 0.000
F775_14938 Aegilops tauschii F775_14938 N 0.000
F775_30638 Aegilops tauschii F775_30638 I 0.000
gene11344-v1.0-hybrid Fragaria vesca gene11344-v1.0-hybrid I 0.000
gene27940-v1.0-hybrid Fragaria vesca gene27940-v1.0-hybrid I 0.000
gene29766-v1.0-hybrid Fragaria vesca gene29766-v1.0-hybrid I 0.000
GLYMA01G00880 Glycine max GLYMA01G00880 I 0.000
GLYMA01G22510 Glycine max GLYMA01G22510 I 0.000
GLYMA02G11140 Glycine max GLYMA02G11140 I 0.000
GLYMA05G09110 Glycine max GLYMA05G09110 I 0.000
GLYMA05G36031 Glycine max GLYMA05G36031 I 0.000
GLYMA06G44250 Glycine max GLYMA06G44250 I 0.000
GLYMA07G15180 Glycine max GLYMA07G15180 I 0.000
GLYMA07G32250 Glycine max GLYMA07G32250 I 0.000
GLYMA08G03590 Glycine max GLYMA08G03590 I 0.000
GLYMA12G13710 Glycine max GLYMA12G13710 I 0.000
GLYMA12G33460 Glycine max GLYMA12G33460 I 0.000
GLYMA13G24320 Glycine max GLYMA13G24320 I 0.000
GLYMA13G30800 Glycine max GLYMA13G30800 I 0.000
GLYMA13G36980 Glycine max GLYMA13G36980 I 0.000
GLYMA15G08480 Glycine max GLYMA15G08480 I 0.000
GLYMA16G07501 Glycine max GLYMA16G07501 N 0.000
GLYMA19G00640 Glycine max GLYMA19G00640 N 0.000
GLYMA19G08510 Glycine max GLYMA19G08510 N 0.000
GLYMA20G32690 Glycine max GLYMA20G32690 I 0.000
Gorai.006G034600 Gossypium raimondii Gorai.006G034600 I 0.000
Gorai.007G075300 Gossypium raimondii Gorai.007G075300 I 0.000
Gorai.008G155200 Gossypium raimondii Gorai.008G155200 I 0.000
Gorai.008G186300 Gossypium raimondii Gorai.008G186300 I 0.000
Gorai.009G028900 Gossypium raimondii Gorai.009G028900 I 0.000
Gorai.010G078900 Gossypium raimondii Gorai.010G078900 I 0.000
Gorai.010G157600 Gossypium raimondii Gorai.010G157600 I 0.000
GRMZM2G038073 Zea mays GRMZM2G038073 N 0.000
GRMZM2G104078 Zea mays GRMZM2G104078 N 0.000
GRMZM2G112681 Zea mays GRMZM2G112681 I 0.000
GRMZM2G166721 Zea mays GRMZM2G166721 I 0.000
GSMUA_Achr2G16590_001 Musa acuminata GSMUA_Achr2G16590_001 I 0.000
GSMUA_Achr3G07330_001 Musa acuminata GSMUA_Achr3G07330_001 I 0.000
GSMUA_Achr4G02730_001 Musa acuminata GSMUA_Achr4G02730_001 I 0.000
GSMUA_Achr4G30940_001 Musa acuminata GSMUA_Achr4G30940_001 I 0.000
GSMUA_Achr6G05480_001 Musa acuminata GSMUA_Achr6G05480_001 I 0.000
GSMUA_Achr7G09510_001 Musa acuminata GSMUA_Achr7G09510_001 I 0.000
GSMUA_Achr9G01880_001 Musa acuminata GSMUA_Achr9G01880_001 I 0.000
GSMUA_AchrUn_randomG28610_001 Musa acuminata GSMUA_AchrUn_randomG28610_001 I 0.000
LPERR01G05530 Leersia perrieri LPERR01G05530 I 0.000
LPERR01G22300 Leersia perrieri LPERR01G22300 I 0.000
LPERR02G18380 Leersia perrieri LPERR02G18380 N 0.000
LPERR05G05170 Leersia perrieri LPERR05G05170 I 0.000
Lus10003668.g Linum usitatissimum Lus10003668.g N 0.000
Lus10018637.g Linum usitatissimum Lus10018637.g I 0.000
Lus10039873.g Linum usitatissimum Lus10039873.g I 0.000
MDP0000124509 Malus domestica MDP0000124509 I 0.000
MDP0000276278 Malus domestica MDP0000276278 I 0.000
MDP0000283975 Malus domestica MDP0000283975 N 0.000
MDP0000309351 Malus domestica MDP0000309351 I 0.000
MDP0000663564 Malus domestica MDP0000663564 I 0.000
mgf018486m Mimulus guttatus mgf018486m I 0.000
MLOC_75795 Hordeum vulgare MLOC_75795 I 0.000
MTR_2g014680 Medicago truncatula MTR_2g014680 I 0.000
MTR_2g090735 Medicago truncatula MTR_2g090735 I 0.000
MTR_4g088245 Medicago truncatula MTR_4g088245 I 0.000
MTR_7g033320 Medicago truncatula MTR_7g033320 I 0.000
MTR_8g069160 Medicago truncatula MTR_8g069160 I 0.000
NAC010 Arabidopsis thaliana AT1G28470 D 0.000
NAC073 Arabidopsis thaliana AT4G28500 D 0.000
OB01G15780 Oryza brachyantha OB01G15780 I 0.000
OB02G30060 Oryza brachyantha OB02G30060 N 0.000
OB05G15600 Oryza brachyantha OB05G15600 I 0.000
OB06G19430 Oryza brachyantha OB06G19430 I 0.000
OBART01G05840 Oryza barthii OBART01G05840 I 0.000
OBART02G22660 Oryza barthii OBART02G22660 N 0.000
OBART05G06140 Oryza barthii OBART05G06140 I 0.000
OBART06G10240 Oryza barthii OBART06G10240 I 0.000
OGLUM01G06390 Oryza glumaepatula OGLUM01G06390 I 0.000
OGLUM02G22980 Oryza glumaepatula OGLUM02G22980 N 0.000
OGLUM06G11140 Oryza glumaepatula OGLUM06G11140 I 0.000
OLONG_008708 Oryza longistaminata OLONG_008708 I 0.000
OLONG_014922 Oryza longistaminata OLONG_014922 I 0.000
OLONG_017685 Oryza longistaminata OLONG_017685 I 0.000
OLONG_021085 Oryza longistaminata OLONG_021085 I 0.000
OLONG_021848 Oryza longistaminata OLONG_021848 N 0.000
OMERI01G23720 Oryza meridionalis OMERI01G23720 I 0.000
OMERI02G22200 Oryza meridionalis OMERI02G22200 N 0.000
OMERI06G11940 Oryza meridionalis OMERI06G11940 I 0.000
ONIVA01G06690 Oryza nivara ONIVA01G06690 I 0.000
ONIVA02G25300 Oryza nivara ONIVA02G25300 N 0.000
ONIVA05G06750 Oryza nivara ONIVA05G06750 I 0.000
ONIVA06G11950 Oryza nivara ONIVA06G11950 I 0.000
OPUNC01G05680 Oryza punctata OPUNC01G05680 I 0.000
OPUNC01G25960 Oryza punctata OPUNC01G25960 I 0.000
OPUNC02G20570 Oryza punctata OPUNC02G20570 N 0.000
OPUNC04G13980 Oryza punctata OPUNC04G13980 N 0.000
OPUNC06G09830 Oryza punctata OPUNC06G09830 I 0.000
orange1.1g021635m.g Citrus sinensis orange1.1g021635m.g I 0.000
ORGLA01G0055000 Oryza glaberrima ORGLA01G0055000 I 0.000
ORGLA01G0213300 Oryza glaberrima ORGLA01G0213300 I 0.000
ORGLA02G0193300 Oryza glaberrima ORGLA02G0193300 N 0.000
ORGLA05G0055000 Oryza glaberrima ORGLA05G0055000 I 0.000
ORGLA06G0096700 Oryza glaberrima ORGLA06G0096700 I 0.000
ORUFI01G06380 Oryza rufipogon ORUFI01G06380 I 0.000
ORUFI01G29010 Oryza rufipogon ORUFI01G29010 I 0.000
ORUFI02G23890 Oryza rufipogon ORUFI02G23890 N 0.000
ORUFI05G06530 Oryza rufipogon ORUFI05G06530 I 0.000
ORUFI06G10770 Oryza rufipogon ORUFI06G10770 I 0.000
OS01G0191300 Oryza sativa OS01G0191300 I 0.000
OS02G0594800 Oryza sativa OS02G0594800 N 0.000
OS05G0194500 Oryza sativa OS05G0194500 I 0.000
Pavir.Aa00442 Panicum virgatum Pavir.Aa00442 I 0.000
Pavir.Aa01341 Panicum virgatum Pavir.Aa01341 I 0.000
Pavir.Ab02181 Panicum virgatum Pavir.Ab02181 I 0.000
Pavir.Ab02919 Panicum virgatum Pavir.Ab02919 I 0.000
Pavir.Da01643 Panicum virgatum Pavir.Da01643 I 0.000
Pavir.Eb00261 Panicum virgatum Pavir.Eb00261 I 0.000
Pavir.Ga01597 Panicum virgatum Pavir.Ga01597 I 0.000
Pavir.Ga02265 Panicum virgatum Pavir.Ga02265 I 0.000
Pavir.Ga02302 Panicum virgatum Pavir.Ga02302 I 0.000
Pavir.Gb01338 Panicum virgatum Pavir.Gb01338 I 0.000
Pavir.J05241 Panicum virgatum Pavir.J05241 I 0.000
Pavir.J13205 Panicum virgatum Pavir.J13205 I 0.000
PDK_20s1381351g001 Phoenix dactylifera PDK_20s1381351g001 I 0.000
PGSC0003DMG400000809 Solanum tuberosum PGSC0003DMG400000809 I 0.000
PGSC0003DMG400009381 Solanum tuberosum PGSC0003DMG400009381 I 0.000
PGSC0003DMG400012607 Solanum tuberosum PGSC0003DMG400012607 I 0.000
PGSC0003DMG400016896 Solanum tuberosum PGSC0003DMG400016896 I 0.000
PGSC0003DMG400031753 Solanum tuberosum PGSC0003DMG400031753 I 0.000
PK17141.1 Cannabis sativa PK17141.1 I 0.000
PK25812.1 Cannabis sativa PK25812.1 I 0.000
PK27085.1 Cannabis sativa PK27085.1 D 0.000
PK28347.1 Cannabis sativa PK28347.1 I 0.000
Pm010104 Prunus mume Pm010104 I 0.000
Pm015625 Prunus mume Pm015625 I 0.000
Pm027280 Prunus mume Pm027280 I 0.000
POPTR_0001s35490 Populus trichocarpa POPTR_0001s35490 I 0.000
POPTR_0006s15740 Populus trichocarpa POPTR_0006s15740 I 0.000
POPTR_0007s01350 Populus trichocarpa POPTR_0007s01350 I 0.000
POPTR_0008s11550 Populus trichocarpa POPTR_0008s11550 I 0.000
POPTR_0010s13980 Populus trichocarpa POPTR_0010s13980 I 0.000
POPTR_0017s04800 Populus trichocarpa POPTR_0017s04800 I 0.000
POPTR_0018s06790 Populus trichocarpa POPTR_0018s06790 I 0.000
PRUPE_ppa004775mg Prunus persica PRUPE_ppa004775mg I 0.000
PRUPE_ppa006948mg Prunus persica PRUPE_ppa006948mg I 0.000
PRUPE_ppa008828mg Prunus persica PRUPE_ppa008828mg I 0.000
SapurV1A.0079s0500 Salix purpurea SapurV1A.0079s0500 I 0.000
SapurV1A.0212s0190 Salix purpurea SapurV1A.0212s0190 I 0.000
SapurV1A.0716s0010 Salix purpurea SapurV1A.0716s0010 I 0.000
SapurV1A.1259s0030 Salix purpurea SapurV1A.1259s0030 I 0.000
SapurV1A.1388s0020 Salix purpurea SapurV1A.1388s0020 I 0.000
SapurV1A.1828s0030 Salix purpurea SapurV1A.1828s0030 I 0.000
SapurV1A.2554s0030 Salix purpurea SapurV1A.2554s0030 I 0.000
SapurV1A.3101s0030 Salix purpurea SapurV1A.3101s0030 I 0.000
Sb03g003170 Sorghum bicolor Sb03g003170 I 0.000
Sb03g030750 Sorghum bicolor Sb03g030750 I 0.000
Sb04g024780 Sorghum bicolor Sb04g024780 N 0.000
Sb06g020103 Sorghum bicolor Sb06g020103 I 0.000
Sb09g006015 Sorghum bicolor Sb09g006015 I 0.000
Si001527m.g Setaria italica Si001527m.g I 0.000
Si002301m.g Setaria italica Si002301m.g I 0.000
Si006639m.g Setaria italica Si006639m.g I 0.000
Si012740m.g Setaria italica Si012740m.g N 0.000
Si017393m.g Setaria italica Si017393m.g I 0.000
Si019444m.g Setaria italica Si019444m.g I 0.000
SOG1 Vitis vinifera VIT_01s0011g02990 I 0.000
Solyc02g077610.2 Solanum lycopersicum Solyc02g077610.2 I 0.000
Solyc02g093420.2 Solanum lycopersicum Solyc02g093420.2 I 0.000
Solyc05g026180.1 Solanum lycopersicum Solyc05g026180.1 I 0.000
Solyc07g053590.2 Solanum lycopersicum Solyc07g053590.2 I 0.000
TCM_008229 Theobroma cacao TCM_008229 I 0.000
TCM_011869 Theobroma cacao TCM_011869 I 0.000
TCM_016984 Theobroma cacao TCM_016984 I 0.000
TCM_029798 Theobroma cacao TCM_029798 I 0.000
TCM_037747 Theobroma cacao TCM_037747 I 0.000
Thhalv10008249m.g Eutrema salsugineum Thhalv10008249m.g I 0.000
Thhalv10024980m.g Eutrema salsugineum Thhalv10024980m.g I 0.000
Thhalv10025819m.g Eutrema salsugineum Thhalv10025819m.g I 0.000
TRAES3BF097400030CFD_g Triticum aestivum TRAES3BF097400030CFD_g I 0.000
Traes_6AL_C14335DC8 Triticum aestivum Traes_6AL_C14335DC8 I 0.000
Traes_6BL_B27806C89 Triticum aestivum Traes_6BL_B27806C89 I 0.000
Traes_6DL_2F3586557 Triticum aestivum Traes_6DL_2F3586557 I 0.000
Traes_7AS_6E6A5CD04 Triticum aestivum Traes_7AS_6E6A5CD04 I 0.000
Traes_7BS_99BF8BA2F Triticum aestivum Traes_7BS_99BF8BA2F I 0.000
Traes_7DS_78B5508C0 Triticum aestivum Traes_7DS_78B5508C0 I 0.000
TRIUR3_21992 Triticum urartu TRIUR3_21992 I 0.000
TRIUR3_27393 Triticum urartu TRIUR3_27393 I 0.000
VIT_11s0016g02880 Vitis vinifera VIT_11s0016g02880 I 0.000
VIT_14s0066g00360 Vitis vinifera VIT_14s0066g00360 I 0.000