rbpj.S (Xenopus laevis)
CSL

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF09271 (LAG1-DNAbind) IPR015351 XB-GENE-865998 T166352_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBPJ
M00735_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig2 		0.992 0.992
RBPJ
M00736_2.00 		Homo sapiens
NNNYTCHCAN
NTGDGARNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig4 		0.992 0.992
RBPJ
M00737_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL-NOTCH1 		0.992 0.992
RBPJ
M00738_2.00 		Homo sapiens
NBTCHCAN
NTGDGAVN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His_MAML1 		0.992 0.992
RBPJ
M00739_2.00 		Homo sapiens
NNBTCHCAN
NTGDGAVNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His 		0.992 0.992
RBPJ
M00740_2.00 		Homo sapiens
NNNYTCYCAN
NTGRGARNNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_Fig2 		0.992 0.992
RBPJ
M00741_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig2 		0.992 0.992
RBPJ
M00742_2.00 		Homo sapiens
NDYTCHCAB
VTGDGARHN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig5 		0.992 0.992
RBPJ
M08105_2.00 		Homo sapiens
NNTTCCCABN
NVTGGGAANN		 ChIP-seq
Mathelier et al.(2014)
MA1116.1 		0.992 0.992
RBPJ
M09020_2.00 		Homo sapiens
BTTCCCASVVN
NBBSTGGGAAV		 Misc
Kulakovskiy et al.(2013)
SUH_HUMAN.H11MO.0.A 		0.992 0.992
Rbpj
M09021_2.00 		Mus musculus
NBTTCCCASVV
BBSTGGGAAVN		 Misc
Kulakovskiy et al.(2013)
SUH_MOUSE.H11MO.0.A 		0.992 0.992
RBPJ
M10413_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_01 		0.992 0.992
RBPJ
M10414_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_Q4 		0.992 0.992
Su(H)
M10415_2.00 		Drosophila melanogaster
VGKTTCYCACRVY
RBYGTGRGAAMCB		 Transfac
Matys et al.(2006)
I$SUH_01 		0.786 0.786
Su(H)
M08455_2.00 		Drosophila melanogaster
HBHNVGKTTCYCACRV
BYGTGRGAAMCBNDVD		 COMPILED
Mathelier et al.(2014)
MA0085.1 		0.786 0.786
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAB05478 CSL 49 179
AAI33205 CSL 35 165

Links

Other CSL family TFs
Other Xenopus laevis TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29983.m003125 Ricinus communis 29983.m003125 I
ANAC073 Vitis vinifera VIT_12s0028g03050 I
BRADI1G69617 Brachypodium distachyon BRADI1G69617 N
BRADI3G47627 Brachypodium distachyon BRADI3G47627 I
cassava17166.m1 Manihot esculenta cassava17166.m1 I
cassava46566.m1 Manihot esculenta cassava46566.m1 I
Ciclev10017822m.g Citrus clementina Ciclev10017822m.g I
Eucgr.J02254 Eucalyptus grandis Eucgr.J02254 I
evm.TU.supercontig_83.99 Carica papaya evm.TU.supercontig_83.99 I
F775_30638 Aegilops tauschii F775_30638 I
Gorai.008G155200 Gossypium raimondii Gorai.008G155200 I
GRMZM2G077045 Zea mays GRMZM2G077045 N
GRMZM2G342647 Zea mays GRMZM2G342647 N
GRMZM5G894234 Zea mays GRMZM5G894234 N
GSMUA_Achr6G11230_001 Musa acuminata GSMUA_Achr6G11230_001 I
LPERR03G07880 Leersia perrieri LPERR03G07880 N
LPERR05G05170 Leersia perrieri LPERR05G05170 I
OBART03G08740 Oryza barthii OBART03G08740 N
OGLUM03G08850 Oryza glumaepatula OGLUM03G08850 N
OLONG_014784 Oryza longistaminata OLONG_014784 N
OMERI02G18080 Oryza meridionalis OMERI02G18080 N
ONIVA06G00900 Oryza nivara ONIVA06G00900 N
OPUNC03G08410 Oryza punctata OPUNC03G08410 N
orange1.1g021635m.g Citrus sinensis orange1.1g021635m.g I
ORGLA01G0213300 Oryza glaberrima ORGLA01G0213300 I
ORGLA03G0084800 Oryza glaberrima ORGLA03G0084800 N
ORUFI03G08860 Oryza rufipogon ORUFI03G08860 N
Pavir.Aa00442 Panicum virgatum Pavir.Aa00442 I
Pavir.Ib00786 Panicum virgatum Pavir.Ib00786 N
Pavir.J05241 Panicum virgatum Pavir.J05241 I
PDK_20s1306131g001 Phoenix dactylifera PDK_20s1306131g001 I
PGSC0003DMG400031753 Solanum tuberosum PGSC0003DMG400031753 I
PK28347.1 Cannabis sativa PK28347.1 I
POPTR_0007s01350 Populus trichocarpa POPTR_0007s01350 I
POPTR_0017s04800 Populus trichocarpa POPTR_0017s04800 I
SapurV1A.1828s0030 Salix purpurea SapurV1A.1828s0030 I
SapurV1A.2554s0030 Salix purpurea SapurV1A.2554s0030 I
SapurV1A.3101s0030 Salix purpurea SapurV1A.3101s0030 I
Sb01g042570 Sorghum bicolor Sb01g042570 N
Sb03g030750 Sorghum bicolor Sb03g030750 I
Si002301m.g Setaria italica Si002301m.g I
Si019444m.g Setaria italica Si019444m.g I
Solyc02g077610.2 Solanum lycopersicum Solyc02g077610.2 I
TCM_008229 Theobroma cacao TCM_008229 I
Traes_6AL_C14335DC8 Triticum aestivum Traes_6AL_C14335DC8 I
Traes_6BL_B27806C89 Triticum aestivum Traes_6BL_B27806C89 I
Traes_6DL_2F3586557 Triticum aestivum Traes_6DL_2F3586557 I
TRIUR3_27393 Triticum urartu TRIUR3_27393 I