Alligator_sinensis_CCG016574.1 (Alligator sinensis)
CxxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02008 (zf-CXXC) IPR002857 Alligator_sinensis_CCG016574.1 T168569_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KDM2B
M01911_2.00 		Homo sapiens
NNNNNNCGN
NCGNNNNNN		 PBM
Weirauch et al.(2014)
pTH9191 		1.000 1.000
kdm2ba
M01909_2.00 		Danio rerio
NNNNCGN
NCGNNNN		 PBM
Weirauch et al.(2014)
pTH8577 		0.979 0.979
FBXL19
M01916_2.00 		Tetraodon nigroviridis
NNNNCGNN
NNCGNNNN		 PBM
Weirauch et al.(2014)
pTH8570 		0.894 0.894
A6H8I1_DANRE
M01906_2.00 		Danio rerio
CGTACGYA
TRCGTACG		 PBM
Weirauch et al.(2014)
pTH9257 		0.851 0.851
KDM2A
M01915_2.00 		Meleagris gallopavo
NNNNYRNNNN
NNNNYRNNNN		 PBM
Weirauch et al.(2014)
pTH9212 		0.809 0.809
BGIBMGA012843
M01907_2.00 		Bombyx mori
NNCGCGTANVNN
NNBNTACGCGNN		 PBM
Weirauch et al.(2014)
pTH9239 		0.766 0.766
kdm2aa
M01910_2.00 		Danio rerio
NCGNNNNNN
NNNNNNCGN		 PBM
Weirauch et al.(2014)
pTH8585 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG016574.1 CxxC 802 848

Links

Other CxxC family TFs
Other Alligator sinensis TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA010468 Oryza indica BGIOSGA010468 I
BGIOSGA010469 Oryza indica BGIOSGA010469 N
BGIOSGA010470 Oryza indica BGIOSGA010470 N
Bo7g117320 Brassica oleracea Bo7g117320 I
BRADI2G49250 Brachypodium distachyon BRADI2G49250 N
Cagra.2350s0072 Capsella grandiflora Cagra.2350s0072 I
Ca_05641 Cicer arietinum Ca_05641 I
Eucgr.F02262 Eucalyptus grandis Eucgr.F02262 I
evm.TU.supercontig_249.7 Carica papaya evm.TU.supercontig_249.7 I
F775_12743 Aegilops tauschii F775_12743 N
GLYMA10G40400 Glycine max GLYMA10G40400 I
GRMZM5G883760 Zea mays GRMZM5G883760 N
GSMUA_Achr10G31400_001 Musa acuminata GSMUA_Achr10G31400_001 N
GSMUA_Achr6G34890_001 Musa acuminata GSMUA_Achr6G34890_001 I
GSMUA_Achr7G20260_001 Musa acuminata GSMUA_Achr7G20260_001 N
gw1.254.15.1 Physcomitrella patens gw1.254.15.1 I
LPERR03G19190 Leersia perrieri LPERR03G19190 N
LPERR03G21480 Leersia perrieri LPERR03G21480 I
MLOC_51405 Hordeum vulgare MLOC_51405 I
OB03G31780 Oryza brachyantha OB03G31780 I
OB03G31790 Oryza brachyantha OB03G31790 N
OBART03G22560 Oryza barthii OBART03G22560 N
OBART03G22570 Oryza barthii OBART03G22570 I
OGLUM03G23340 Oryza glumaepatula OGLUM03G23340 N
OGLUM03G23350 Oryza glumaepatula OGLUM03G23350 I
OLONG_027628 Oryza longistaminata OLONG_027628 I
OPUNC03G21190 Oryza punctata OPUNC03G21190 N
OPUNC12G15600 Oryza punctata OPUNC12G15600 I
ORGLA03G0210200 Oryza glaberrima ORGLA03G0210200 N
ORGLA03G0210300 Oryza glaberrima ORGLA03G0210300 I
ORUFI03G23230 Oryza rufipogon ORUFI03G23230 N
ORUFI03G23240 Oryza rufipogon ORUFI03G23240 I
OS03G0437100 Oryza sativa OS03G0437100 N
OS03G0437200 Oryza sativa OS03G0437200 I
OS11G0340477 Oryza sativa OS11G0340477 N
OS12G0583700 Oryza sativa OS12G0583700 I
PDK_20s1446781g002 Phoenix dactylifera PDK_20s1446781g002 N
Sb01g031920 Sorghum bicolor Sb01g031920 N
Si037343m.g Setaria italica Si037343m.g N
Traes_2BS_494F02775 Triticum aestivum Traes_2BS_494F02775 N
Traes_2DS_11ADF414D Triticum aestivum Traes_2DS_11ADF414D N
Traes_4BS_FE945D2FC Triticum aestivum Traes_4BS_FE945D2FC I