30106.m000672 (Ricinus communis)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 30106.m000672 T181019_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.909 0.909
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.909 0.909
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.727 0.727
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.727 0.727
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30106.m000672 FAR1 76 163

Links

Other FAR1 family TFs
Other Ricinus communis TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_187697 Agaricus bisporus AGABI2DRAFT_187697 I
AGABI2DRAFT_193390 Agaricus bisporus AGABI2DRAFT_193390 I
AGABI2DRAFT_206331 Agaricus bisporus AGABI2DRAFT_206331 I
AGABI2DRAFT_222360 Agaricus bisporus AGABI2DRAFT_222360 I
BN946_scf184969.g81 Trametes cinnabarina BN946_scf184969.g81 N
BN946_scf185008.g7 Trametes cinnabarina BN946_scf185008.g7 I
CC1G_12055 Coprinopsis cinerea CC1G_12055 I
CC1G_15575 Coprinopsis cinerea CC1G_15575 I
CERSUDRAFT_112795 Ceriporiopsis subvermispora CERSUDRAFT_112795 I
CERSUDRAFT_114708 Ceriporiopsis subvermispora CERSUDRAFT_114708 N
CERSUDRAFT_145919 Ceriporiopsis subvermispora CERSUDRAFT_145919 N
CERSUDRAFT_46791 Ceriporiopsis subvermispora CERSUDRAFT_46791 I
CY34DRAFT_797799 Suillus luteus CY34DRAFT_797799 N
CY34DRAFT_798473 Suillus luteus CY34DRAFT_798473 I
CY34DRAFT_803634 Suillus luteus CY34DRAFT_803634 N
DACRYDRAFT_21143 Dacryopinax sp DACRYDRAFT_21143 I
DICSQDRAFT_156876 Dichomitus squalens DICSQDRAFT_156876 N
estExt_Genewise1Plus.C_60615 Heterobasidion annosum estExt_Genewise1Plus.C_60615 I
EuGene6000619 Heterobasidion annosum EuGene6000619 I
fgenesh1_pg.C_scaffold_3000367 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_3000367 I
fgenesh1_pg.C_scaffold_4000651 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000651 N
FOMPIDRAFT_1030155 Fomitopsis pinicola FOMPIDRAFT_1030155 I
FOMPIDRAFT_148963 Fomitopsis pinicola FOMPIDRAFT_148963 I
FOMPIDRAFT_151847 Fomitopsis pinicola FOMPIDRAFT_151847 N
GALMADRAFT_129710 Galerina marginata GALMADRAFT_129710 I
GALMADRAFT_222679 Galerina marginata GALMADRAFT_222679 I
GALMADRAFT_96046 Galerina marginata GALMADRAFT_96046 I
GLOTRDRAFT_139640 Gloeophyllum trabeum GLOTRDRAFT_139640 N
GLOTRDRAFT_46721 Gloeophyllum trabeum GLOTRDRAFT_46721 N
GLOTRDRAFT_48184 Gloeophyllum trabeum GLOTRDRAFT_48184 N
GLOTRDRAFT_75085 Gloeophyllum trabeum GLOTRDRAFT_75085 I
GLOTRDRAFT_80766 Gloeophyllum trabeum GLOTRDRAFT_80766 N
GYMLUDRAFT_204658 Gymnopus luxurians GYMLUDRAFT_204658 N
GYMLUDRAFT_42558 Gymnopus luxurians GYMLUDRAFT_42558 I
GYMLUDRAFT_42922 Gymnopus luxurians GYMLUDRAFT_42922 I
GYMLUDRAFT_45397 Gymnopus luxurians GYMLUDRAFT_45397 I
HETIRDRAFT_327516 Heterobasidion irregulare HETIRDRAFT_327516 N
HETIRDRAFT_459989 Heterobasidion irregulare HETIRDRAFT_459989 I
HYDPIDRAFT_115133 Hydnomerulius pinastri HYDPIDRAFT_115133 I
HYDPIDRAFT_175933 Hydnomerulius pinastri HYDPIDRAFT_175933 N
JAAARDRAFT_157067 Jaapia argillacea JAAARDRAFT_157067 N
JAAARDRAFT_204099 Jaapia argillacea JAAARDRAFT_204099 I
JAAARDRAFT_30847 Jaapia argillacea JAAARDRAFT_30847 I
JAAARDRAFT_36304 Jaapia argillacea JAAARDRAFT_36304 N
K443DRAFT_2600 Laccaria amethystina K443DRAFT_2600 I
K443DRAFT_672096 Laccaria amethystina K443DRAFT_672096 I
K443DRAFT_673001 Laccaria amethystina K443DRAFT_673001 I
K443DRAFT_674079 Laccaria amethystina K443DRAFT_674079 I
LACBIDRAFT_302761 Laccaria bicolor LACBIDRAFT_302761 I
LACBIDRAFT_317135 Laccaria bicolor LACBIDRAFT_317135 I
M378DRAFT_161851 Amanita muscaria M378DRAFT_161851 I
M404DRAFT_13375 Pisolithus tinctorius M404DRAFT_13375 N
M404DRAFT_997952 Pisolithus tinctorius M404DRAFT_997952 I
M413DRAFT_310281 Hebeloma cylindrosporum M413DRAFT_310281 I
M413DRAFT_445487 Hebeloma cylindrosporum M413DRAFT_445487 I
M413DRAFT_446984 Hebeloma cylindrosporum M413DRAFT_446984 I
MELLADRAFT_104422 Melampsora laricipopulina MELLADRAFT_104422 I
Moror_11062 Moniliophthora roreri Moror_11062 I
Moror_17515 Moniliophthora roreri Moror_17515 I
Moror_4700 Moniliophthora roreri Moror_4700 I
Moror_6764 Moniliophthora roreri Moror_6764 N
PAXRUDRAFT_138309 Paxillus rubicundulus PAXRUDRAFT_138309 I
PAXRUDRAFT_822949 Paxillus rubicundulus PAXRUDRAFT_822949 N
PAXRUDRAFT_9870 Paxillus rubicundulus PAXRUDRAFT_9870 N
PGTG_18397 Puccinia graminis PGTG_18397 I
PHACADRAFT_208392 Phanerochaete carnosa PHACADRAFT_208392 N
PHACADRAFT_263672 Phanerochaete carnosa PHACADRAFT_263672 I
PHLGIDRAFT_108170 Phlebiopsis gigantea PHLGIDRAFT_108170 I
PHLGIDRAFT_127425 Phlebiopsis gigantea PHLGIDRAFT_127425 N
PHLGIDRAFT_32525 Phlebiopsis gigantea PHLGIDRAFT_32525 I
PILCRDRAFT_142493 Piloderma croceum PILCRDRAFT_142493 N
PILCRDRAFT_723293 Piloderma croceum PILCRDRAFT_723293 N
PILCRDRAFT_827976 Piloderma croceum PILCRDRAFT_827976 I
PISMIDRAFT_108067 Pisolithus microcarpus PISMIDRAFT_108067 I
PISMIDRAFT_29414 Pisolithus microcarpus PISMIDRAFT_29414 I
PLEOSDRAFT_1034000 Pleurotus ostreatus PLEOSDRAFT_1034000 N
PLEOSDRAFT_1113284 Pleurotus ostreatus PLEOSDRAFT_1113284 I
PLEOSDRAFT_30253 Pleurotus ostreatus PLEOSDRAFT_30253 I
PLICRDRAFT_47417 Plicaturopsis crispa PLICRDRAFT_47417 N
POSPLDRAFT_101241 Postia placenta POSPLDRAFT_101241 N
POSPLDRAFT_19733 Postia placenta POSPLDRAFT_19733 I
POSPLDRAFT_92174 Postia placenta POSPLDRAFT_92174 N
POSPLDRAFT_92176 Postia placenta POSPLDRAFT_92176 N
POSPLDRAFT_92179 Postia placenta POSPLDRAFT_92179 N
POSPLDRAFT_92181 Postia placenta POSPLDRAFT_92181 N
POSPLDRAFT_92233 Postia placenta POSPLDRAFT_92233 N
POSPLDRAFT_97457 Postia placenta POSPLDRAFT_97457 N
POSPLDRAFT_97461 Postia placenta POSPLDRAFT_97461 N
POSPLDRAFT_97463 Postia placenta POSPLDRAFT_97463 N
SCHCODRAFT_111379 Schizophyllum commune SCHCODRAFT_111379 I
SCHCODRAFT_258888 Schizophyllum commune SCHCODRAFT_258888 I
SCHCODRAFT_67234 Schizophyllum commune SCHCODRAFT_67234 D
SCLCIDRAFT_106216 Scleroderma citrinum SCLCIDRAFT_106216 I
SCLCIDRAFT_1222350 Scleroderma citrinum SCLCIDRAFT_1222350 N
SCLCIDRAFT_13431 Scleroderma citrinum SCLCIDRAFT_13431 I
SERLA73DRAFT_177669 Serpula lacrymans SERLA73DRAFT_177669 N
SERLA73DRAFT_87647 Serpula lacrymans SERLA73DRAFT_87647 N
V565_059490 Rhizoctonia solani V565_059490 I