CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cucsa.180090 *(Cucumis sativus)* FAR1
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03101 (FAR1)	IPR004330	Cucsa.180090	T181082_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FAR1 M06880_2.00	Arabidopsis thaliana	NNYHCACGCGCYDNH	DNHRGCGCGTGDRNN	Dap-seq OMalley et al.(2016) FAR1_col_a	0.898	0.898
FAR1 M06881_2.00	Arabidopsis thaliana	NNNNBDNDNNYHCACGCGCYD	HRGCGCGTGDRNNHNHVNNNN	Dap-seq OMalley et al.(2016) FAR1_colamp_a	0.898	0.898
For this family, TFs with SR scores > 0.700* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cucsa.180090.1	FAR1	46	133	TFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESESGNSRRPSVKKTDCKASMHVKRRPDGRWIIHEFIKDHNHELLP
Cucsa.180090.2	FAR1	46	133	TFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESESGNSRRPSVKKTDCKASMHVKRRPDGRWIIHEFIKDHNHELLP
Cucsa.180090.3	FAR1	46	133	TFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESESGNSRRPSVKKTDCKASMHVKRRPDGRWIIHEFIKDHNHELLP

Links
Other FAR1 family TFs
Other *Cucumis sativus* TFs