CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc01g100220.2
(
Solanum lycopersicum
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00320 (GATA)
IPR000679
Solyc01g100220.2
T195290_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GATA16
M06897_2.00
Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT
Dap-seq
OMalley et al.(2016)
GATA16_col_a
0.808
0.722
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc01g100220.2.1
GATA
21
56
CSDCKTTKTPLWRSGPSGPKSLCNACGIKYRKKKSS
Links
Other
GATA
family TFs
Other
Solanum lycopersicum
TFs
102 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29889.m003248
Ricinus communis
29889.m003248
I
0.814
AT4G16141
Arabidopsis thaliana
AT4G16141
I
0.822
BGIOSGA013867
Oryza indica
BGIOSGA013867
I
0.837
BGIOSGA013869
Oryza indica
BGIOSGA013869
I
0.837
Bo00847s050
Brassica oleracea
Bo00847s050
I
0.808
Bo1g055120
Brassica oleracea
Bo1g055120
I
0.822
Bo1g122970
Brassica oleracea
Bo1g122970
I
0.822
Bo3g068560
Brassica oleracea
Bo3g068560
I
0.822
Bo5g123610
Brassica oleracea
Bo5g123610
I
0.822
Bo7g104200
Brassica oleracea
Bo7g104200
I
0.822
Bostr.15774s0060
Boechera stricta
Bostr.15774s0060
I
0.808
Bostr.28625s0006
Boechera stricta
Bostr.28625s0006
I
0.822
Bostr.30275s0055
Boechera stricta
Bostr.30275s0055
I
0.822
Bra012742
Brassica rapa
Bra012742
I
0.822
Bra021209
Brassica rapa
Bra021209
I
0.822
Bra022184
Brassica rapa
Bra022184
I
0.822
Bra033533
Brassica rapa
Bra033533
I
0.822
BRADI1G03020
Brachypodium distachyon
BRADI1G03020
I
0.826
Cagra.0053s0014
Capsella grandiflora
Cagra.0053s0014
I
0.822
Cagra.5497s0020
Capsella grandiflora
Cagra.5497s0020
I
0.822
Carubv10005860m.g
Capsella rubella
Carubv10005860m.g
I
0.822
Carubv10014665m.g
Capsella rubella
Carubv10014665m.g
I
0.822
Carubv10027332m.g
Capsella rubella
Carubv10027332m.g
I
0.808
cassava15577.m1
Manihot esculenta
cassava15577.m1
I
0.826
cassava15588.m1
Manihot esculenta
cassava15588.m1
I
0.826
cassava37139.valid.m1
Manihot esculenta
cassava37139.valid.m1
I
0.814
cassava43030.valid.m1
Manihot esculenta
cassava43030.valid.m1
I
0.808
Ca_02992
Cicer arietinum
Ca_02992
I
0.809
Ciclev10003698m.g
Citrus clementina
Ciclev10003698m.g
I
0.814
Ciclev10006161m.g
Citrus clementina
Ciclev10006161m.g
I
0.813
Cla009422
Citrullus lanatus
Cla009422
I
0.813
Cla022104
Citrullus lanatus
Cla022104
I
0.808
Cucsa.069460
Cucumis sativus
Cucsa.069460
I
0.813
Cucsa.252730
Cucumis sativus
Cucsa.252730
I
0.808
Eucgr.A00193
Eucalyptus grandis
Eucgr.A00193
I
0.808
Eucgr.H04023
Eucalyptus grandis
Eucgr.H04023
I
0.813
evm.TU.supercontig_151.51
Carica papaya
evm.TU.supercontig_151.51
I
0.826
evm.TU.supercontig_48.133
Carica papaya
evm.TU.supercontig_48.133
I
0.826
evm.TU.supercontig_9.102
Carica papaya
evm.TU.supercontig_9.102
I
0.808
F775_43556
Aegilops tauschii
F775_43556
I
0.806
fgenesh1_pm.C_scaffold_7002128
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_7002128
I
0.822
GATA16
Arabidopsis thaliana
AT5G49300
D
0.808
GATA16
Arabidopsis lyrata
scaffold_801309.1
I
0.808
GATA17
Arabidopsis thaliana
AT3G16870
I
0.822
GATA17
Arabidopsis lyrata
fgenesh2_kg.3__1856__AT3G16870.1
I
0.822
gene05175-v1.0-hybrid
Fragaria vesca
gene05175-v1.0-hybrid
I
0.808
GLYMA07G37190
Glycine max
GLYMA07G37190
I
0.814
GLYMA17G03410
Glycine max
GLYMA17G03410
I
0.814
Gorai.005G065300
Gossypium raimondii
Gorai.005G065300
I
0.808
Gorai.007G125000
Gossypium raimondii
Gorai.007G125000
I
0.826
Gorai.008G142200
Gossypium raimondii
Gorai.008G142200
I
0.814
Gorai.013G127900
Gossypium raimondii
Gorai.013G127900
I
0.826
Gorai.013G206400
Gossypium raimondii
Gorai.013G206400
N
0.825
GSMUA_Achr1G14780_001
Musa acuminata
GSMUA_Achr1G14780_001
N
0.810
LjSGA_011217.1
Lotus japonicus
LjSGA_011217.1
I
0.809
LPERR03G33900
Leersia perrieri
LPERR03G33900
I
0.837
Lus10016849.g
Linum usitatissimum
Lus10016849.g
I
0.808
Lus10031464.g
Linum usitatissimum
Lus10031464.g
I
0.821
Lus10037721.g
Linum usitatissimum
Lus10037721.g
I
0.808
MDP0000309902
Malus domestica
MDP0000309902
I
0.836
mgf003937m
Mimulus guttatus
mgf003937m
I
0.808
mgf011737m
Mimulus guttatus
mgf011737m
N
0.825
mgf022078m
Mimulus guttatus
mgf022078m
I
0.851
MTR_4g121110
Medicago truncatula
MTR_4g121110
I
0.809
OBART03G39750
Oryza barthii
OBART03G39750
I
0.837
OGLUM03G39650
Oryza glumaepatula
OGLUM03G39650
I
0.837
OLONG_023900
Oryza longistaminata
OLONG_023900
I
0.837
OMERI03G36600
Oryza meridionalis
OMERI03G36600
I
0.837
ONIVA03G41600
Oryza nivara
ONIVA03G41600
I
0.837
OPUNC03G36900
Oryza punctata
OPUNC03G36900
I
0.837
OPUNC03G36910
Oryza punctata
OPUNC03G36910
I
0.837
orange1.1g030971m.g
Citrus sinensis
orange1.1g030971m.g
I
0.814
orange1.1g032112m.g
Citrus sinensis
orange1.1g032112m.g
I
0.813
ORUFI03G41540
Oryza rufipogon
ORUFI03G41540
I
0.837
OS03G0831200
Oryza sativa
OS03G0831200
I
0.837
PGSC0003DMG400002337
Solanum tuberosum
PGSC0003DMG400002337
I
0.819
PGSC0003DMG400004624
Solanum tuberosum
PGSC0003DMG400004624
I
0.813
PGSC0003DMG400023434
Solanum tuberosum
PGSC0003DMG400023434
I
0.827
PGSC0003DMG400024783
Solanum tuberosum
PGSC0003DMG400024783
I
0.867
PGSC0003DMG400031828
Solanum tuberosum
PGSC0003DMG400031828
N
0.835
PK18820.1
Cannabis sativa
PK18820.1
I
0.813
PK21934.1
Cannabis sativa
PK21934.1
I
0.840
Pm008287
Prunus mume
Pm008287
I
0.808
POPTR_0005s02040
Populus trichocarpa
POPTR_0005s02040
I
0.826
POPTR_0008s22950
Populus trichocarpa
POPTR_0008s22950
I
0.809
POPTR_0010s00360
Populus trichocarpa
POPTR_0010s00360
I
0.809
PRUPE_ppa013171mg
Prunus persica
PRUPE_ppa013171mg
I
0.808
SapurV1A.0107s0060
Salix purpurea
SapurV1A.0107s0060
I
0.826
SapurV1A.0186s0560
Salix purpurea
SapurV1A.0186s0560
I
0.826
SapurV1A.0739s0060
Salix purpurea
SapurV1A.0739s0060
I
0.809
SapurV1A.2413s0010
Salix purpurea
SapurV1A.2413s0010
I
0.809
Solyc05g054400.2
Solanum lycopersicum
Solyc05g054400.2
I
0.827
Solyc09g075610.2
Solanum lycopersicum
Solyc09g075610.2
N
0.835
Solyc12g099370.1
Solanum lycopersicum
Solyc12g099370.1
I
0.813
TCM_004753
Theobroma cacao
TCM_004753
I
0.814
TCM_021303
Theobroma cacao
TCM_021303
I
0.808
TCM_026732
Theobroma cacao
TCM_026732
I
0.826
Thhalv10005103m.g
Eutrema salsugineum
Thhalv10005103m.g
I
0.808
Thhalv10021612m.g
Eutrema salsugineum
Thhalv10021612m.g
I
0.822
Thhalv10026300m.g
Eutrema salsugineum
Thhalv10026300m.g
I
0.822
Traes_5BL_F258582BB
Triticum aestivum
Traes_5BL_F258582BB
I
0.806
VIT_05s0077g01450
Vitis vinifera
VIT_05s0077g01450
I
0.813