gene01638-v1.0-hybrid (Fragaria vesca)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 gene01638-v1.0-hybrid T196560_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.857 0.861
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.857 0.861
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.853 0.861
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.853 0.861
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.847 0.833
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.847 0.833
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.847 0.833
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.847 0.833
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.839 0.861
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.837 0.861
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.833 0.806
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.832 0.833
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.806
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.806
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.750
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.750
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01638.1-v1.0-hybrid GATA 272 307

Links

Other GATA family TFs
Other Fragaria vesca TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30078.m002228 Ricinus communis 30078.m002228 N
30170.m013811 Ricinus communis 30170.m013811 N
AMTR_s00008p00208550 Amborella trichopoda AMTR_s00008p00208550 N
AMTR_s00022p00039680 Amborella trichopoda AMTR_s00022p00039680 N
Aquca_019_00150 Aquilegia coerulea Aquca_019_00150 N
Aquca_020_00172 Aquilegia coerulea Aquca_020_00172 N
Aquca_095_00049 Aquilegia coerulea Aquca_095_00049 N
AT1G76590 Arabidopsis thaliana AT1G76590 N
BGIOSGA001527 Oryza indica BGIOSGA001527 N
BGIOSGA006963 Oryza indica BGIOSGA006963 N
Bo5g049240 Brassica oleracea Bo5g049240 N
Bo6g120700 Brassica oleracea Bo6g120700 N
Bo7g059750 Brassica oleracea Bo7g059750 N
Bo7g105550 Brassica oleracea Bo7g105550 N
Bo8g070540 Brassica oleracea Bo8g070540 N
Bostr.20129s0097 Boechera stricta Bostr.20129s0097 N
Bostr.27991s0138 Boechera stricta Bostr.27991s0138 N
Bostr.30275s0258 Boechera stricta Bostr.30275s0258 N
Bra012263 Brassica rapa Bra012263 N
Bra012632 Brassica rapa Bra012632 N
Bra015731 Brassica rapa Bra015731 N
Bra016441 Brassica rapa Bra016441 N
Bra021029 Brassica rapa Bra021029 N
Bra023280 Brassica rapa Bra023280 N
BRADI2G38150 Brachypodium distachyon BRADI2G38150 N
BRADI3G52170 Brachypodium distachyon BRADI3G52170 N
BRADI5G19980 Brachypodium distachyon BRADI5G19980 N
Cagra.15046s0001 Capsella grandiflora Cagra.15046s0001 N
Cagra.2281s0027 Capsella grandiflora Cagra.2281s0027 N
Carubv10020852m.g Capsella rubella Carubv10020852m.g N
Carubv10024278m.g Capsella rubella Carubv10024278m.g N
cassava15058.m1 Manihot esculenta cassava15058.m1 N
cassava2216.valid.m1 Manihot esculenta cassava2216.valid.m1 N
cassava7406.valid.m1 Manihot esculenta cassava7406.valid.m1 N
cassava9017.m1 Manihot esculenta cassava9017.m1 N
Ca_11235 Cicer arietinum Ca_11235 N
Ca_12361 Cicer arietinum Ca_12361 N
chr1.CM0591.460.nd Lotus japonicus chr1.CM0591.460.nd N
chr3.CM0127.220.nc Lotus japonicus chr3.CM0127.220.nc N
Ciclev10012756m.g Citrus clementina Ciclev10012756m.g N
Ciclev10030107m.g Citrus clementina Ciclev10030107m.g N
Cla010408 Citrullus lanatus Cla010408 N
Cla018029 Citrullus lanatus Cla018029 N
Cucsa.321900 Cucumis sativus Cucsa.321900 N
Cucsa.378840 Cucumis sativus Cucsa.378840 N
estExt_gwp_gw1.C_1330066 Physcomitrella patens estExt_gwp_gw1.C_1330066 N
Eucgr.B03915 Eucalyptus grandis Eucgr.B03915 N
Eucgr.E00457 Eucalyptus grandis Eucgr.E00457 N
Eucgr.E01501 Eucalyptus grandis Eucgr.E01501 N
evm.TU.supercontig_71.62 Carica papaya evm.TU.supercontig_71.62 N
F775_28196 Aegilops tauschii F775_28196 N
fgenesh2_kg.7__2515__AT4G17900.1 Arabidopsis lyrata fgenesh2_kg.7__2515__AT4G17900.1 N
GLYMA11G11640 Glycine max GLYMA11G11640 N
GLYMA12G01890 Glycine max GLYMA12G01890 N
Gorai.001G117900 Gossypium raimondii Gorai.001G117900 N
Gorai.003G056500 Gossypium raimondii Gorai.003G056500 N
Gorai.004G184500 Gossypium raimondii Gorai.004G184500 N
Gorai.006G159900 Gossypium raimondii Gorai.006G159900 N
Gorai.007G032400 Gossypium raimondii Gorai.007G032400 N
Gorai.009G411100 Gossypium raimondii Gorai.009G411100 N
GRMZM2G006585 Zea mays GRMZM2G006585 N
GRMZM2G131280 Zea mays GRMZM2G131280 N
GSMUA_Achr7G04460_001 Musa acuminata GSMUA_Achr7G04460_001 N
LjSGA_028172.2 Lotus japonicus LjSGA_028172.2 N
Lus10020337.g Linum usitatissimum Lus10020337.g N
Lus10023411.g Linum usitatissimum Lus10023411.g N
mgf002787m Mimulus guttatus mgf002787m N
mgf006925m Mimulus guttatus mgf006925m N
MLOC_60535 Hordeum vulgare MLOC_60535 N
MLOC_63157 Hordeum vulgare MLOC_63157 N
OB01G27340 Oryza brachyantha OB01G27340 N
OB08G30470 Oryza brachyantha OB08G30470 N
OBART01G17850 Oryza barthii OBART01G17850 N
OMERI01G16670 Oryza meridionalis OMERI01G16670 N
OPUNC10G17840 Oryza punctata OPUNC10G17840 N
orange1.1g028382m.g Citrus sinensis orange1.1g028382m.g N
OS01G0518000 Oryza sativa OS01G0518000 N
Pavir.Eb02108 Panicum virgatum Pavir.Eb02108 N
Pavir.Fa00017 Panicum virgatum Pavir.Fa00017 N
Pavir.Fb02226 Panicum virgatum Pavir.Fb02226 N
Pavir.J05501 Panicum virgatum Pavir.J05501 N
Pavir.J13246 Panicum virgatum Pavir.J13246 N
PGSC0003DMG400007670 Solanum tuberosum PGSC0003DMG400007670 N
PGSC0003DMG400017518 Solanum tuberosum PGSC0003DMG400017518 N
PK01309.1 Cannabis sativa PK01309.1 N
PK14253.1 Cannabis sativa PK14253.1 N
Pm001175 Prunus mume Pm001175 N
Pm012470 Prunus mume Pm012470 N
Pm026291 Prunus mume Pm026291 N
POPTR_0002s00430 Populus trichocarpa POPTR_0002s00430 N
POPTR_0006s12100 Populus trichocarpa POPTR_0006s12100 N
PRUPE_ppa011458mg Prunus persica PRUPE_ppa011458mg N
PRUPE_ppa011630mg Prunus persica PRUPE_ppa011630mg N
SapurV1A.0151s0140 Salix purpurea SapurV1A.0151s0140 N
SapurV1A.0210s0200 Salix purpurea SapurV1A.0210s0200 N
SapurV1A.0554s0100 Salix purpurea SapurV1A.0554s0100 N
SapurV1A.0555s0010 Salix purpurea SapurV1A.0555s0010 N
SapurV1A.1507s0030 Salix purpurea SapurV1A.1507s0030 N
SapurV1A.1628s0020 Salix purpurea SapurV1A.1628s0020 N
SapurV1A.5427s0010 Salix purpurea SapurV1A.5427s0010 N
Sb04g006320 Sorghum bicolor Sb04g006320 N
Sb04g006330 Sorghum bicolor Sb04g006330 N
SELMODRAFT_412053 Selaginella moellendorffii SELMODRAFT_412053 N
SELMODRAFT_429924 Selaginella moellendorffii SELMODRAFT_429924 N
Si017318m.g Setaria italica Si017318m.g N
Si019344m.g Setaria italica Si019344m.g N
Solyc06g061240.2 Solanum lycopersicum Solyc06g061240.2 N
Solyc08g005100.2 Solanum lycopersicum Solyc08g005100.2 N
Solyc08g076860.2 Solanum lycopersicum Solyc08g076860.2 N
TCM_041560 Theobroma cacao TCM_041560 N
Thhalv10001013m.g Eutrema salsugineum Thhalv10001013m.g N
Thhalv10008750m.g Eutrema salsugineum Thhalv10008750m.g N
Thhalv10019067m.g Eutrema salsugineum Thhalv10019067m.g N
Traes_2AL_74EFA5757 Triticum aestivum Traes_2AL_74EFA5757 N
Traes_2BL_69847FCA6 Triticum aestivum Traes_2BL_69847FCA6 N
Traes_3AL_970EF6E45 Triticum aestivum Traes_3AL_970EF6E45 N
Traes_3DL_96F825D26 Triticum aestivum Traes_3DL_96F825D26 N
Traes_7BL_694F67827 Triticum aestivum Traes_7BL_694F67827 N
TRIUR3_09966 Triticum urartu TRIUR3_09966 N
TRIUR3_25489 Triticum urartu TRIUR3_25489 N
VIT_06s0061g00880 Vitis vinifera VIT_06s0061g00880 N
VIT_18s0122g00320 Vitis vinifera VIT_18s0122g00320 N
XM_002306973.1 Populus trichocarpa POPTR_0005s28040 N