UBP1 (Oryctolagus cuniculus)
Grainyhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF04516 (CP2) IPR007604 ENSOCUG00000011063 T199135_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UBP1
M04893_2.00 		Homo sapiens
NDCYRGHNNNNDCYRGHN
NDCYRGHNNNNDCYRGHN		 SELEX
Yin et al.(2017)
UBP1_eDBD_HT-SELEX 		0.986 0.986
UBP1
M10614_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP1_Q6_01 		0.986 0.986
UBP1
M10615_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP1_Q6 		0.986 0.986
UBP1
M04894_2.00 		Homo sapiens
DWCYRGHHNNDDCYRGWH
DWCYRGHHNNDDCYRGWH		 SELEX
Yin et al.(2017)
UBP1_eDBD_Methyl-HT-SELEX 		0.986 0.986
ENSGALG00000002235
M02030_2.00 		Gallus gallus
AACCGGTTA
TAACCGGTT		 PBM
Weirauch et al.(2014)
pTH8565 		0.794 0.794
TFCP2L1
M04885_2.00 		Homo sapiens
DCYRGHHNNNDCYRGH
DCYRGHNNNDDCYRGH		 SELEX
Yin et al.(2017)
TFCP2L1_eDBD_HT-SELEX 		0.766 0.766
TFCP2L1
M10609_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LBP9_01 		0.766 0.766
TFCP2L1
M04886_2.00 		Homo sapiens
DCYRGHHNNDDCYRGH
DCYRGHHNNDDCYRGH		 SELEX
Yin et al.(2017)
TFCP2L1_eDBD_Methyl-HT-SELEX 		0.766 0.766
Tcfcp2l1
M08029_2.00 		Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG		 ChIP-seq
Chen et al.(2011)
SRP000217_Tcfc2pI1 		0.742 0.742
Tcfcp2l1
M08030_2.00 		Mus musculus
CYRGYYYHDDCYRGHYYNNNN
NNNNRRDCYRGHHDRRRCYRG		 ChIP-seq
Chen et al.(2011)
SRP000217_Tcfcp2I1 		0.742 0.742
Tcfcp2l1
M09127_2.00 		Mus musculus
DDCYRGYTYHNDCYRGHYB
VRDCYRGHNDRARCYRGHH		 Misc
Kulakovskiy et al.(2013)
TF2L1_MOUSE.H11MO.0.C 		0.742 0.742
TFCP2
M03074_2.00 		Homo sapiens
DAWCCGGTTY
RAACCGGWTH		 SELEX
Jolma et al.(2013)
TFCP2_1 		0.724 0.724
TFCP2
M03075_2.00 		Homo sapiens
WCCGGWWHDAWCYGGW
WCCRGWTHDWWCCGGW		 SELEX
Jolma et al.(2013)
TFCP2_2 		0.724 0.724
TFCP2
M04889_2.00 		Homo sapiens
DWCYRGWHNNDWCYRGWH
DWCYRGWHNNDWCYRGWH		 SELEX
Yin et al.(2017)
TFCP2_eDBD_HT-SELEX 		0.724 0.724
TFCP2
M04891_2.00 		Homo sapiens
AWCYGGTTHNDACCGGTW
WACCGGTHNDAACCRGWT		 SELEX
Yin et al.(2017)
TFCP2_FL_HT-SELEX 		0.724 0.724
TFCP2
M10610_2.00 		Homo sapiens
CTKGKTHKDGC
GCHMDAMCMAG		 Transfac
Matys et al.(2006)
V$CP2_01 		0.724 0.724
TFCP2
M10611_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CP2_02 		0.724 0.724
TFCP2
M10612_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CP2_Q4 		0.724 0.724
TFCP2
M10613_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CP2_Q6 		0.724 0.724
TFCP2
M04890_2.00 		Homo sapiens
DWCYRGWHNNDWCYRGWH
DWCYRGWHNNDWCYRGWH		 SELEX
Yin et al.(2017)
TFCP2_eDBD_Methyl-HT-SELEX 		0.724 0.724
TFCP2
M04892_2.00 		Homo sapiens
AWCCGGWTNDAWCCGGTT
AACCGGWTHNAACCGGWT		 SELEX
Yin et al.(2017)
TFCP2_FL_Methyl-HT-SELEX 		0.724 0.724
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000009518 Grainyhead 36 251

Links

Other Grainyhead family TFs
Other Oryctolagus cuniculus TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC198518.3_FG005 Zea mays AC198518.3_FG005 N
BGIOSGA013618 Oryza indica BGIOSGA013618 N
BGIOSGA035596 Oryza indica BGIOSGA035596 N
BGIOSGA037460 Oryza indica BGIOSGA037460 N
BRADI4G06567 Brachypodium distachyon BRADI4G06567 N
BRADI4G12615 Brachypodium distachyon BRADI4G12615 N
chr5.CM0200.490.nc Lotus japonicus chr5.CM0200.490.nc N
chr5.CM0200.500.nc Lotus japonicus chr5.CM0200.500.nc N
F775_23312 Aegilops tauschii F775_23312 N
gene12191-v1.0-hybrid Fragaria vesca gene12191-v1.0-hybrid N
GRMZM2G165188 Zea mays GRMZM2G165188 N
LPERR03G29580 Leersia perrieri LPERR03G29580 N
MDP0000876738 Malus domestica MDP0000876738 N
MTR_1g106470 Medicago truncatula MTR_1g106470 N
OB03G42180 Oryza brachyantha OB03G42180 N
OB11G25500 Oryza brachyantha OB11G25500 N
OBART11G20580 Oryza barthii OBART11G20580 N
OBART12G13380 Oryza barthii OBART12G13380 N
OGLUM03G34950 Oryza glumaepatula OGLUM03G34950 N
OGLUM11G20000 Oryza glumaepatula OGLUM11G20000 N
OGLUM12G15010 Oryza glumaepatula OGLUM12G15010 N
OLONG_003723 Oryza longistaminata OLONG_003723 N
OLONG_021754 Oryza longistaminata OLONG_021754 N
OLONG_028675 Oryza longistaminata OLONG_028675 N
OMERI03G32400 Oryza meridionalis OMERI03G32400 N
ONIVA03G36690 Oryza nivara ONIVA03G36690 N
ONIVA11G20620 Oryza nivara ONIVA11G20620 N
OPUNC03G32220 Oryza punctata OPUNC03G32220 N
OPUNC11G17200 Oryza punctata OPUNC11G17200 N
ORGLA03G0322200 Oryza glaberrima ORGLA03G0322200 N
ORGLA10G0168100 Oryza glaberrima ORGLA10G0168100 N
ORGLA11G0169400 Oryza glaberrima ORGLA11G0169400 N
ORGLA12G0196200 Oryza glaberrima ORGLA12G0196200 N
ORUFI03G36640 Oryza rufipogon ORUFI03G36640 N
ORUFI11G22390 Oryza rufipogon ORUFI11G22390 N
ORUFI12G14590 Oryza rufipogon ORUFI12G14590 N
OS11G0634700 Oryza sativa OS11G0634700 N
Pavir.Ca02388 Panicum virgatum Pavir.Ca02388 N
Pavir.Ca02532 Panicum virgatum Pavir.Ca02532 N
Pavir.Cb00430 Panicum virgatum Pavir.Cb00430 N
Pavir.Ha00126 Panicum virgatum Pavir.Ha00126 N
Pavir.Hb00249 Panicum virgatum Pavir.Hb00249 N
Pavir.Ia01481 Panicum virgatum Pavir.Ia01481 N
Pavir.Ib03951 Panicum virgatum Pavir.Ib03951 N
PGSC0003DMG400003231 Solanum tuberosum PGSC0003DMG400003231 N
Pm021173 Prunus mume Pm021173 N
PRUPE_ppa015724mg Prunus persica PRUPE_ppa015724mg N
Sb01g014580 Sorghum bicolor Sb01g014580 N
Sb08g019780 Sorghum bicolor Sb08g019780 N
Si022813m.g Setaria italica Si022813m.g N
Si024550m.g Setaria italica Si024550m.g N
Si028242m.g Setaria italica Si028242m.g N
Si038695m.g Setaria italica Si038695m.g N
Solyc10g049720.1 Solanum lycopersicum Solyc10g049720.1 N
Solyc10g049780.1 Solanum lycopersicum Solyc10g049780.1 N
TRAES3BF169000100CFD_g Triticum aestivum TRAES3BF169000100CFD_g N
Traes_3DL_801E89185 Triticum aestivum Traes_3DL_801E89185 N
TRIUR3_10349 Triticum urartu TRIUR3_10349 N