CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SCL13
(
Arabidopsis thaliana
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
AT4G17230
T199838_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G17230.1
GRAS
155
525
LKEVLVEAARAVADGDFATAYGFLDVLEQMVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEPTGRELMSYMSVLYEICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKRPGGPPLLRVTGVDDSQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAIMSGCKVQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVERHEVLGIWRVRMMMAGFTGWPVSTSAAFAASEMLKAYDKNYKLGGHEGALYLFWKRRPMATCSVWK
AT4G17230.2
GRAS
155
525
LKEVLVEAARAVADGDFATAYGFLDVLEQMVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEPTGRELMSYMSVLYEICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKRPGGPPLLRVTGVDDSQSTYARGGGLSLVGERLATLAQSCGVPFEFHDAIMSGCKVQREHLGLEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLSPKLVTLVEQESNTNTSPFLSRFVETLDYYTAMFESIDAARPRDDKQRISAEQHCVARDIVNMIACEESERVERHEVLGIWRVRMMMAGFTGWPVSTSAAFAASEMLKAYDKNYKLGGHEGALYLFWKRRPMATCSVWK
Links
Other
GRAS
family TFs
Other
Arabidopsis thaliana
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo1g052870
Brassica oleracea
Bo1g052870
N
0.902
Bo8g047170
Brassica oleracea
Bo8g047170
N
0.889
Bostr.30275s0178
Boechera stricta
Bostr.30275s0178
N
0.962
Bra021063
Brassica rapa
Bra021063
N
0.894
Bra026237
Brassica rapa
Bra026237
N
0.894
Cagra.3356s0014
Capsella grandiflora
Cagra.3356s0014
N
0.957
Carubv10004566m.g
Capsella rubella
Carubv10004566m.g
N
0.957
Ciclev10014811m.g
Citrus clementina
Ciclev10014811m.g
N
0.707
evm.TU.supercontig_27.254
Carica papaya
evm.TU.supercontig_27.254
N
0.712
orange1.1g008984m.g
Citrus sinensis
orange1.1g008984m.g
N
0.705
SCL13
Arabidopsis lyrata
fgenesh2_kg.7__2586__AT4G17230.1
N
0.753
Thhalv10024887m.g
Eutrema salsugineum
Thhalv10024887m.g
N
0.916