CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10011270m.g
(
Capsella rubella
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Carubv10011270m.g
T202352_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10011270m
GRAS
43
447
LRRLLFTAADFVSQSNFTAARNLLSILSLNSSPYGDSTQRLAHLFTKALSLRINRLQQEQDPTVATCTTNEMTMSTNSTVFTSSVCKEQFLFRTKNNNSDFESCYYLWLNQLTPFIRFGHLTANQAILDATETNDNGALHILDLDISQGLQWPPLMQALAERSSSPNSPPPSLRITGCGRDVTGLNRTGDRLTRFANSLGLQFQFHKLVIVDEDLPGLLLQIRLLALSAVQGETIAVNCVHFLYKFFNDDADLIGHFLTVIKSLNPRIVTMAEREANHGDHSFLIRFSEALDHYVAIFDSLEATLPPNSRERLTLEQRWFGKEIMDVVAAEATERKQRHRRFEIWGEMMKRFGFVNVPIGSFALSQAKLLLRLHYPSEGYNLQFLNDSLFLGWQNRLLFSVSSWK
Links
Other
GRAS
family TFs
Other
Capsella rubella
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo2g047700
Brassica oleracea
Bo2g047700
N
Bo9g083130
Brassica oleracea
Bo9g083130
N
Bra022596
Brassica rapa
Bra022596
N
Bra028312
Brassica rapa
Bra028312
N
Cagra.4170s0002
Capsella grandiflora
Cagra.4170s0002
N
Carubv10026035m.g
Capsella rubella
Carubv10026035m.g
N
fgenesh2_kg.205__1__AT5G52510.1
Arabidopsis lyrata
fgenesh2_kg.205__1__AT5G52510.1
N
fgenesh2_kg.8__1135__AT5G52510.1
Arabidopsis lyrata
fgenesh2_kg.8__1135__AT5G52510.1
N
SCL8
Arabidopsis thaliana
AT5G52510
N
Thhalv10012936m.g
Eutrema salsugineum
Thhalv10012936m.g
N