CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.4170s0002
(
Capsella grandiflora
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Cagra.4170s0002
T202332_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.4170s0002.1.p
GRAS
279
666
SRQTVMEIATAIAEGKTEIASEILASVSQTPNLRRNSEEKLVDFMVTALRHRINNPAESLPSPATELYGKEHLLSTQLLYELSPCFKLGFMAANLAILDAAGNNDEGVINLHVIDFDIGEGGQYVHLLHALSTRRNGNSQNTKTPVVKITAVTNNSDGFVVGDGGEERLKAVGDLLSQLGDRLGISVSFNVVASLRLGDLSRESLGCDPDEPLAVNLAFKLYRVPDESVCTENPRDELLRRVKGLNPRVVTIVEQEMNSNTAPFLGRVSESCACYGALLESVESTVPSSNTDRGKVEEGIGRKIVNAVACEGMDRIERCEVFGKWRMRMSMAGFELMASSEKIAESMKSRLSNNNGKRVHSGFTVKEDNGGVCFGWMGRTLAVASAWR
Links
Other
GRAS
family TFs
Other
Capsella grandiflora
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10026035m.g
Capsella rubella
Carubv10026035m.g
N
1.000
Bostr.7305s0021
Boechera stricta
Bostr.7305s0021
N
0.899
Thhalv10012936m.g
Eutrema salsugineum
Thhalv10012936m.g
N
0.896
fgenesh2_kg.205__1__AT5G52510.1
Arabidopsis lyrata
fgenesh2_kg.205__1__AT5G52510.1
N
0.874
SCL8
Arabidopsis thaliana
AT5G52510
N
0.867
fgenesh2_kg.8__1135__AT5G52510.1
Arabidopsis lyrata
fgenesh2_kg.8__1135__AT5G52510.1
N
0.866
Bo2g047700
Brassica oleracea
Bo2g047700
N
0.842
Bo9g083130
Brassica oleracea
Bo9g083130
N
0.842
Bra028312
Brassica rapa
Bra028312
N
0.836
Bra022596
Brassica rapa
Bra022596
N
0.822