CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bra028312
(
Brassica rapa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bra028312
T200000_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra028312.1-P
GRAS
74
454
SRQTVLEIATAIAEGKTEIASEILARVSQTPSQRRNSEEKLVDFMVTALRSRINPAESSAPATELYGKEHIVSTQLLYELSPCFKLGFMAANLAILDASGNKNDDGTSFHVIDFEIGEGGQYVHLLHALSTRRSGKNPLVVRITAVTNISDGFSVAGQRGEERLRTIGDRLSELSDGLGISLKFNVVAGLRLSDLSRESLGCHPDEPLAVNLAFKLYRVPDESVCMENPRDELLRRVKGLNPSVVTLVEEEMNSNTAPFLGRVSESCACYGALLDSVESTVPSSYSDRAKVEEGIGRKLINAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSEKIAESMKSRLSNGNRVHPGFTVKEENGGVCFGWMGRTLAVASAWR
Links
Other
GRAS
family TFs
Other
Brassica rapa
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo9g083130
Brassica oleracea
Bo9g083130
N
0.973
Bostr.7305s0021
Boechera stricta
Bostr.7305s0021
N
0.863
Thhalv10012936m.g
Eutrema salsugineum
Thhalv10012936m.g
N
0.858
Cagra.4170s0002
Capsella grandiflora
Cagra.4170s0002
N
0.836
Carubv10026035m.g
Capsella rubella
Carubv10026035m.g
N
0.836
Bo2g047700
Brassica oleracea
Bo2g047700
N
0.833
SCL8
Arabidopsis thaliana
AT5G52510
N
0.831
Bra022596
Brassica rapa
Bra022596
N
0.811
fgenesh2_kg.205__1__AT5G52510.1
Arabidopsis lyrata
fgenesh2_kg.205__1__AT5G52510.1
N
0.805
fgenesh2_kg.8__1135__AT5G52510.1
Arabidopsis lyrata
fgenesh2_kg.8__1135__AT5G52510.1
N
0.792