RLT1 (Arabidopsis thaliana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AT1G28420 T204455_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLT1
M02038_2.00		 Arabidopsis thaliana
NDHTCWWN
NWWGADHN		 PBM
Weirauch et al.(2014)
pTH5432		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.599 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02038_2.00 Homeodomain 1 57

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G28420.1 Homeodomain 40 96

Links

Other Homeodomain family TFs
Other Arabidopsis thaliana TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000011243 Ailuropoda melanoleuca ENSAMEG00000011243 I
ENSCJAG00000015664 Callithrix jacchus ENSCJAG00000015664 I
ENSCSAG00000017829 Chlorocebus sabaeus ENSCSAG00000017829 I
ENSDORG00000015914 Dipodomys ordii ENSDORG00000015914 I
ENSMEUG00000006695 Macropus eugenii ENSMEUG00000006695 I
ENSMPUG00000010898 Mustela putorius furo ENSMPUG00000010898 I
ENSNLEG00000011334 Nomascus leucogenys ENSNLEG00000011334 I
ENSOARG00000017971 Ovis aries ENSOARG00000017971 I
ENSOPRG00000005191 Ochotona princeps ENSOPRG00000005191 I
ENSP00000323148 Macaca fascicularis ENSP00000323148 I
ENSPANG00000021727 Papio anubis ENSPANG00000021727 I
ENSPPYG00000017394 Pongo abelii ENSPPYG00000017394 I
ENSSHAG00000012439 Sarcophilus harrisii ENSSHAG00000012439 I
ENSSSCG00000007643 Sus scrofa ENSSSCG00000007643 I
ENSSTOG00000010173 Ictidomys tridecemlineatus ENSSTOG00000010173 I
ENSTSYG00000002021 Tarsius syrichta ENSTSYG00000002021 I
Myotis_brandtii_ZKSCAN1_10002829 Myotis brandtii Myotis_brandtii_ZKSCAN1_10002829 I
ZKSCAN1 Pan troglodytes ENSPTRG00000019468 I
ZKSCAN1 Bos taurus ENSBTAG00000016757 I
ZKSCAN1 Canis familiaris ENSCAFG00000031298 I
ZKSCAN1 Vicugna pacos ENSVPAG00000008160 I
ZKSCAN1 Tursiops truncatus ENSTTRG00000012308 I
ZKSCAN1 Choloepus hoffmanni ENSCHOG00000008882 I
ZKSCAN1 Tupaia belangeri ENSTBEG00000013785 I
ZKSCAN1 Cavia porcellus ENSCPOG00000005770 I
ZKSCAN1 Equus caballus ENSECAG00000022801 I
ZKSCAN1 Erinaceus europaeus ENSEEUG00000006215 I
ZKSCAN1 Sorex araneus ENSSARG00000002353 I
Zkscan1 Rattus norvegicus ENSRNOG00000001335 I
ZKSCAN1 Monodelphis domestica ENSMODG00000004145 I
ZKSCAN1 Echinops telfairi ENSETEG00000002676 I
ZKSCAN1 Procavia capensis ENSPCAG00000005258 I
ZKSCAN1 Homo sapiens ENSG00000106261 D
ZKSCAN1 Gorilla gorilla ENSGGOG00000005107 I
ZKSCAN1 Otolemur garnettii ENSOGAG00000016308 I
ZKSCAN1 Oryctolagus cuniculus ENSOCUG00000015333 I
ZKSCAN1 Loxodonta africana ENSLAFG00000015561 I
ZKSCAN1 Microcebus murinus ENSMICG00000003957 I
Zkscan1 Mus musculus ENSMUSG00000029729 D
ZKSCAN1 Macaca mulatta ENSMMUG00000008601 I