ENSCING00000019733 (Ciona intestinalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCING00000019733 T207877_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Lhx1
M00405_2.00 		Mus musculus
TRATDRNNN
NNNYHATYA		 PBM
Berger et al.(2008)
Lhx1_2240 		0.849 0.895
Lhx5
M00445_2.00 		Mus musculus
TAATKRNNN
NNNYMATTA		 PBM
Berger et al.(2008)
Lhx5_2279 		0.849 0.895
LHX1
M05410_2.00 		Homo sapiens
NTRATBRN
NYVATYAN		 SELEX
Yin et al.(2017)
LHX1_eDBD_HT-SELEX 		0.849 0.895
LHX5
M04936_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
LHX5_FL_HT-SELEX 		0.849 0.895
LHX1
M05411_2.00 		Homo sapiens
NHRAYGHN
NDCRTYDN		 SELEX
Yin et al.(2017)
LHX1_eDBD_Methyl-HT-SELEX 		0.849 0.895
LHX5
M04937_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_1 		0.849 0.895
LHX5
M04938_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_2 		0.849 0.895
Lim1
M03853_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
Lim1_1 		0.839 0.842
Lim1
M06529_2.00 		Drosophila melanogaster
TTAATTA
TAATTAA		 B1H
Mathelier et al.(2014)
MA0194.1 		0.839 0.842
Lim1
M06332_2.00 		Drosophila melanogaster
TTAATTA
TAATTAA		 B1H
Zhu et al.(2011)
Lim1_Cell_FBgn0026411 		0.839 0.842
Lim1
M06333_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
Lim1_SOLEXA_FBgn0026411 		0.839 0.842
Lim3
M02116_2.00 		Drosophila melanogaster
NNNNNATBRN
NYVATNNNNN		 PBM
Weirauch et al.(2014)
pTH6478 		0.712 0.719
Lim3
M03796_2.00 		Drosophila melanogaster
BTAATTAV
BTAATTAV		 SELEX
Nitta et al.(2015)
Lim3_1 		0.712 0.719
Lim3
M06492_2.00 		Drosophila melanogaster
HTAATKA
TMATTAD		 B1H
Mathelier et al.(2014)
MA0195.1 		0.712 0.719
Lim3
M06258_2.00 		Drosophila melanogaster
HHTAATKA
TMATTADD		 B1H
Zhu et al.(2011)
Lim3_Cell_FBgn0002023 		0.712 0.719
Lim3
M06259_2.00 		Drosophila melanogaster
HTRATTR
YAATYAD		 B1H
Zhu et al.(2011)
Lim3_SOLEXA_FBgn0002023 		0.712 0.719
Lhx4
M00430_2.00 		Mus musculus
NYAATHN
NDATTRN		 PBM
Berger et al.(2008)
Lhx4_1719 		0.700 0.702
Lhx4
M03257_2.00 		Mus musculus
BTAATTRN
NYAATTAV		 SELEX
Jolma et al.(2013)
Lhx4_1 		0.700 0.702
LHX4
M05063_2.00 		Homo sapiens
BYAATYRV
BYRATTRV		 SELEX
Yin et al.(2017)
LHX4_eDBD_HT-SELEX 		0.700 0.702
LHX4
M05066_2.00 		Homo sapiens
BTAATTAN
NTAATTAV		 SELEX
Yin et al.(2017)
LHX4_FL_HT-SELEX 		0.700 0.702
LHX4
M05064_2.00 		Homo sapiens
BYAATTRV
BYAATTRV		 SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_1 		0.700 0.702
LHX4
M05065_2.00 		Homo sapiens
NTWAYGHN
NDCRTWAN		 SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_2 		0.700 0.702
LHX4
M05067_2.00 		Homo sapiens
NYAATTRN
NYAATTRN		 SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_1 		0.700 0.702
LHX4
M05068_2.00 		Homo sapiens
NTAAYGHN
NDCRTTAN		 SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_2 		0.700 0.702
Lhx3
M00435_2.00 		Mus musculus
NNNYAATHW
WDATTRNNN		 PBM
Berger et al.(2008)
Lhx3_3431 		0.700 0.684
Lhx3
M02687_2.00 		Mus musculus
VRWTAATTAATTW
WAATTAATTAWYB		 SELEX
Mathelier et al.(2014)
MA0135.1 		0.700 0.684
LHX3
M09137_2.00 		Homo sapiens
NYTAATTAAWTHH
DDAWTTAATTARN		 Misc
Kulakovskiy et al.(2013)
LHX3_HUMAN.H11MO.0.C 		0.700 0.684
Lhx3
M09188_2.00 		Mus musculus
NYTRATKRV
BYMATYARN		 Misc
Kulakovskiy et al.(2013)
LHX3_MOUSE.H11MO.0.C 		0.700 0.684
Lhx3
M09570_2.00 		Mus musculus
NNBTAATTAV
BTAATTAVNN		 Misc
Heinz et al.(2010)
Neuron-Lhx3_GSE31456 		0.700 0.684
LHX3
M10657_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX3A_01 		0.700 0.684
LHX3
M10658_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX3b_01 		0.700 0.684
LHX3
M10659_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX3_Q3 		0.700 0.684
Q0N4F9_NEMVE
M02162_2.00 		Nematostella vectensis
DTAATTAK
MTAATTAH		 PBM
Weirauch et al.(2014)
pTH6150 		0.662 0.404
Prrx2
M00486_2.00 		Mus musculus
WRATNNN
NNNATYW		 PBM
Berger et al.(2008)
Prrx2_3072 		0.662 0.474
PRRX2
M03200_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
PRRX2_1 		0.662 0.474
Prrx2
M03277_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Prrx2_1 		0.662 0.474
CG9876
M03865_2.00 		Drosophila melanogaster
SVTVATBRSN
NSYVATBABS		 SELEX
Nitta et al.(2015)
CG9876_1 		0.662 0.474
CG9876
M03866_2.00 		Drosophila melanogaster
NTAATTRV
BYAATTAN		 SELEX
Nitta et al.(2015)
CG9876_2 		0.662 0.474
CG9876
M03867_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
CG9876_3 		0.662 0.474
CG9876
M03868_2.00 		Drosophila melanogaster
TAATTRVNTAATTR
YAATTANBYAATTA		 SELEX
Nitta et al.(2015)
CG9876_4 		0.662 0.474
PRRX2
M05262_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
PRRX2_FL_HT-SELEX 		0.662 0.474
PRRX2
M05258_2.00 		Homo sapiens
NTNAYGHN
NDCRTNAN		 SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_1 		0.662 0.474
PRRX2
M05259_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_2 		0.662 0.474
CG9876
M06537_2.00 		Drosophila melanogaster
BTAATTR
YAATTAV		 B1H
Mathelier et al.(2014)
MA0184.1 		0.662 0.474
CG9876
M06350_2.00 		Drosophila melanogaster
DBTAATTR
YAATTAVH		 B1H
Zhu et al.(2011)
CG9876_Cell_FBgn0034821 		0.662 0.474
CG9876
M06351_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
CG9876_SOLEXA_FBgn0034821 		0.662 0.474
PRRX2
M09156_2.00 		Homo sapiens
HTAATTR
YAATTAD		 Misc
Kulakovskiy et al.(2013)
PRRX2_HUMAN.H11MO.0.C 		0.662 0.474
Prrx2
M09207_2.00 		Mus musculus
HTAATTR
YAATTAD		 Misc
Kulakovskiy et al.(2013)
PRRX2_MOUSE.H11MO.0.C 		0.662 0.474
PRRX2
M10735_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRRX2_05 		0.662 0.474
PRRX2
M10776_2.00 		Sus scrofa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRX2_Q2 		0.662 0.474
Prrx2
M10767_2.00 		Mus musculus
HNVHTAATTRRNHNDW
WHNDNYYAATTADBND		 Transfac
Matys et al.(2006)
V$S8_01 		0.662 0.474
PRRX2
M05260_2.00 		Homo sapiens
NTAAYGHN
NDCRTTAN		 SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_1 		0.662 0.474
PRRX2
M05261_2.00 		Homo sapiens
NTAATYRN
NYRATTAN		 SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_2 		0.662 0.474
PRRX2
M05263_2.00 		Homo sapiens
NTAATTRR
YYAATTAN		 SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_1 		0.662 0.474
PRRX2
M05264_2.00 		Homo sapiens
HTAAYGHN
NDCRTTAD		 SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_2 		0.662 0.474
Rax
M00426_2.00 		Mus musculus
NNTAATTRN
NYAATTANN		 PBM
Berger et al.(2008)
Rax_3443 		0.662 0.456
Prrx1
M00431_2.00 		Mus musculus
TAATTRNN
NNYAATTA		 PBM
Berger et al.(2008)
Prrx1_3442 		0.662 0.456
PRRX1
M03120_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
PRRX1_1 		0.662 0.456
PRRX1
M03121_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
PRRX1_2 		0.662 0.456
PRRX1
M03122_2.00 		Homo sapiens
TAATTVRRTTA
TAAYYBAATTA		 SELEX
Jolma et al.(2013)
PRRX1_3 		0.662 0.456
RAX
M03149_2.00 		Homo sapiens
NHTAATTRNN
NNYAATTADN		 SELEX
Jolma et al.(2013)
RAX_1 		0.662 0.456
RAX2
M03214_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
RAXL1_1 		0.662 0.456
Rx
M03840_2.00 		Drosophila melanogaster
BTAATTRV
BYAATTAV		 SELEX
Nitta et al.(2015)
Rx_1 		0.662 0.456
Rx
M03841_2.00 		Drosophila melanogaster
NTAATBNSATTAN
NTAATSNVATTAN		 SELEX
Nitta et al.(2015)
Rx_2 		0.662 0.456
RAX
M05142_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
RAX_eDBD_HT-SELEX 		0.662 0.456
Rx
M06520_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Mathelier et al.(2014)
MA0202.1 		0.662 0.456
Rx
M06317_2.00 		Drosophila melanogaster
VYTAATTR
YAATTARB		 B1H
Zhu et al.(2011)
Rx_Cell_FBgn0020617 		0.662 0.456
Rx
M06318_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
Rx_SOLEXA_FBgn0020617 		0.662 0.456
Prrx1
M10770_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PMX1_01 		0.662 0.456
PRRX1
M10675_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PMX1_Q6 		0.662 0.456
Rax
M10773_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RAX_04 		0.662 0.456
RAX
M05143_2.00 		Homo sapiens
NTAAYRNN
NNYRTTAN		 SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_1 		0.662 0.456
RAX
M05144_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_2 		0.662 0.456
Dlx2
M00423_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Dlx2_2273 		0.662 0.386
Dll
M02112_2.00 		Drosophila melanogaster
NVTAATTANN
NNTAATTABN		 PBM
Weirauch et al.(2014)
pTH5506 		0.662 0.386
DLX2
M03118_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
DLX2_1 		0.662 0.386
Dlx2
M03254_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Dlx2_1 		0.662 0.386
Dll
M03777_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
Dll_1 		0.662 0.386
Dll
M03778_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
Dll_2 		0.662 0.386
DLX2
M05026_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_eDBD_HT-SELEX 		0.662 0.386
DLX2
M05028_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_FL_HT-SELEX 		0.662 0.386
Dll
M06479_2.00 		Drosophila melanogaster
TAATTDB
VHAATTA		 B1H
Mathelier et al.(2014)
MA0187.1 		0.662 0.386
Dll
M06217_2.00 		Drosophila melanogaster
TAATTDB
VHAATTA		 B1H
Zhu et al.(2011)
Dll_Cell_FBgn0000157 		0.662 0.386
Dll
M06218_2.00 		Drosophila melanogaster
TAATKR
YMATTA		 B1H
Zhu et al.(2011)
Dll_SOLEXA_FBgn0000157 		0.662 0.386
DLX2
M10674_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DLX2_Q6 		0.662 0.386
DLX2
M05027_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_eDBD_Methyl-HT-SELEX 		0.662 0.386
DLX2
M05029_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX2_FL_Methyl-HT-SELEX 		0.662 0.386
Dlx3
M00387_2.00 		Mus musculus
NTAATDRNN
NNYHATTAN		 PBM
Berger et al.(2008)
Dlx3_1030 		0.662 0.368
DLX3
M03081_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
DLX3_1 		0.662 0.368
DLX3
M04922_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX3_eDBD_HT-SELEX 		0.662 0.368
DLX3
M04925_2.00 		Homo sapiens
NTAATTRB
VYAATTAN		 SELEX
Yin et al.(2017)
DLX3_FL_HT-SELEX 		0.662 0.368
DLX3
M09129_2.00 		Homo sapiens
RVTAATTRVH
DBYAATTABY		 Misc
Kulakovskiy et al.(2013)
DLX3_HUMAN.H11MO.0.C 		0.662 0.368
Dlx3
M09172_2.00 		Mus musculus
RVTAATTRVH
DBYAATTABY		 Misc
Kulakovskiy et al.(2013)
DLX3_MOUSE.H11MO.0.C 		0.662 0.368
dlx3.L
M10803_2.00 		Xenopus laevis Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DLX3_02 		0.662 0.368
DLX3
M10638_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DLX3_Q3 		0.662 0.368
DLX3
M10639_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DLX3_Q6 		0.662 0.368
dlx3.L
M10804_2.00 		Xenopus laevis
YAWRTAAAYAWWRY
RYWWTRTTTAYWWR		 Transfac
Matys et al.(2006)
V$XFD1_01 		0.662 0.368
DLX3
M04923_2.00 		Homo sapiens
NTWAYKHB
VDMRTWAN		 SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_1 		0.662 0.368
DLX3
M04924_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_2 		0.662 0.368
DLX3
M04926_2.00 		Homo sapiens
NTWAYGHB
VDCRTWAN		 SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_1 		0.662 0.368
DLX3
M04927_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_2 		0.662 0.368
Prop1
M00498_2.00 		Mus musculus
NRAKDDN
NHHMTYN		 PBM
Berger et al.(2008)
Prop1_3949 		0.661 0.561
Prop1
M09210_2.00 		Mus musculus
TAATKRRATTA
TAATYYMATTA		 Misc
Kulakovskiy et al.(2013)
PROP1_MOUSE.H11MO.0.C 		0.661 0.561
PROP1
M00317_2.00 		Homo sapiens
HAAYNNNNNN
NNNNNNRTTD		 PBM
Barrera et al.(2016)
PROP1_REF 		0.661 0.544
PROP1
M03216_2.00 		Homo sapiens
TAATTHRATTA
TAATYDAATTA		 SELEX
Jolma et al.(2013)
PROP1_1 		0.661 0.544
PROP1
M03217_2.00 		Homo sapiens
TAATKNRRTTA
TAAYYNMATTA		 SELEX
Jolma et al.(2013)
PROP1_2 		0.661 0.544
PROP1
M05298_2.00 		Homo sapiens
WAATTNNRTTD
HAAYNNAATTW		 SELEX
Yin et al.(2017)
PROP1_eDBD_HT-SELEX 		0.661 0.544
PROP1
M05301_2.00 		Homo sapiens
TAATTNVATTA
TAATBNAATTA		 SELEX
Yin et al.(2017)
PROP1_FL_HT-SELEX 		0.661 0.544
PROP1
M10777_2.00 		Sus scrofa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PROP1_01 		0.661 0.544
PROP1
M10737_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PROP1_Q2 		0.661 0.544
PROP1
M00315_2.00 		Homo sapiens
NNHNATNN
NNATNDNN		 PBM
Barrera et al.(2016)
PROP1_R112Q 		0.661 0.544
PROP1
M05299_2.00 		Homo sapiens
TAATTNVRTTW
WAAYBNAATTA		 SELEX
Yin et al.(2017)
PROP1_eDBD_Methyl-HT-SELEX_1 		0.661 0.544
PROP1
M05300_2.00 		Homo sapiens
TAAYNDCRTTA
TAAYGHNRTTA		 SELEX
Yin et al.(2017)
PROP1_eDBD_Methyl-HT-SELEX_2 		0.661 0.544
PROP1
M05302_2.00 		Homo sapiens
TAATTNVRTTA
TAAYBNAATTA		 SELEX
Yin et al.(2017)
PROP1_FL_Methyl-HT-SELEX_1 		0.661 0.544
PROP1
M05303_2.00 		Homo sapiens
TAATYRVRTTA
TAAYBYRATTA		 SELEX
Yin et al.(2017)
PROP1_FL_Methyl-HT-SELEX_2 		0.661 0.544
MIXL1
M03231_2.00 		Homo sapiens
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
MIXL1_1 		0.659 0.509
MIXL1
M05359_2.00 		Homo sapiens
TAATBNVATTA
TAATBNVATTA		 SELEX
Yin et al.(2017)
MIXL1_FL_HT-SELEX 		0.659 0.509
MIXL1
M10747_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MIXL1_02 		0.659 0.509
MIXL1
M05360_2.00 		Homo sapiens
TAATYNRATTA
TAATYNRATTA		 SELEX
Yin et al.(2017)
MIXL1_FL_Methyl-HT-SELEX_1 		0.659 0.509
MIXL1
M05361_2.00 		Homo sapiens
TAATYDCRTTA
TAAYGHRATTA		 SELEX
Yin et al.(2017)
MIXL1_FL_Methyl-HT-SELEX_2 		0.659 0.509
Mixl1
M10765_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MIXL1_03 		0.655 0.491
PROP1
M00316_2.00 		Homo sapiens
DTAATTRK
MYAATTAH		 PBM
Barrera et al.(2016)
PROP1_R99Q 		0.653 0.526
Dlx4
M00409_2.00 		Mus musculus
NWAATNDN
NHNATTWN		 PBM
Berger et al.(2008)
Dlx4_3488 		0.652 0.368
Dlx5
M00449_2.00 		Mus musculus
WRATNDN
NHNATYW		 PBM
Berger et al.(2008)
Dlx5_3419 		0.652 0.368
Dlx1
M00491_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Dlx1_1741 		0.652 0.368
DLX1
M03166_2.00 		Homo sapiens
NNTAATTDNN
NNHAATTANN		 SELEX
Jolma et al.(2013)
DLX1_1 		0.652 0.368
DLX4
M03112_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
DLX4_1 		0.652 0.368
DLX5
M03095_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
DLX5_1 		0.652 0.368
DLX6
M03078_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
DLX6_1 		0.652 0.368
Dlx1
M03281_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Dlx1_1 		0.652 0.368
DLX1
M05176_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX1_eDBD_HT-SELEX 		0.652 0.368
DLX1
M05178_2.00 		Homo sapiens
NTAATTRB
VYAATTAN		 SELEX
Yin et al.(2017)
DLX1_FL_HT-SELEX 		0.652 0.368
DLX4
M05002_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX4_eDBD_HT-SELEX 		0.652 0.368
DLX4
M05005_2.00 		Homo sapiens
NTAATTRB
VYAATTAN		 SELEX
Yin et al.(2017)
DLX4_FL_HT-SELEX 		0.652 0.368
DLX5
M04953_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX5_eDBD_HT-SELEX 		0.652 0.368
DLX5
M04956_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX5_FL_HT-SELEX 		0.652 0.368
DLX6
M04905_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX6_eDBD_HT-SELEX 		0.652 0.368
Dlx5
M09195_2.00 		Mus musculus
WAATTRYWKBB
VVMWRYAATTW		 Misc
Kulakovskiy et al.(2013)
DLX5_MOUSE.H11MO.0.C 		0.652 0.368
DLX5
M10650_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DLX5_Q3 		0.652 0.368
DLX1
M05177_2.00 		Homo sapiens
NTAATTRB
VYAATTAN		 SELEX
Yin et al.(2017)
DLX1_eDBD_Methyl-HT-SELEX 		0.652 0.368
DLX1
M05179_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX1_FL_Methyl-HT-SELEX 		0.652 0.368
DLX4
M05003_2.00 		Homo sapiens
NTAAYRAB
VTYRTTAN		 SELEX
Yin et al.(2017)
DLX4_eDBD_Methyl-HT-SELEX_1 		0.652 0.368
DLX4
M05004_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX4_eDBD_Methyl-HT-SELEX_2 		0.652 0.368
DLX4
M05006_2.00 		Homo sapiens
NTAAYKAB
VTMRTTAN		 SELEX
Yin et al.(2017)
DLX4_FL_Methyl-HT-SELEX_1 		0.652 0.368
DLX4
M05007_2.00 		Homo sapiens
NTAATTRB
VYAATTAN		 SELEX
Yin et al.(2017)
DLX4_FL_Methyl-HT-SELEX_2 		0.652 0.368
DLX5
M04954_2.00 		Homo sapiens
NTAAYDAB
VTHRTTAN		 SELEX
Yin et al.(2017)
DLX5_eDBD_Methyl-HT-SELEX_1 		0.652 0.368
DLX5
M04955_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX5_eDBD_Methyl-HT-SELEX_2 		0.652 0.368
DLX5
M04957_2.00 		Homo sapiens
NTAAYGHB
VDCRTTAN		 SELEX
Yin et al.(2017)
DLX5_FL_Methyl-HT-SELEX_1 		0.652 0.368
DLX5
M04958_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX5_FL_Methyl-HT-SELEX_2 		0.652 0.368
DLX6
M04906_2.00 		Homo sapiens
NTAAYKAB
VTMRTTAN		 SELEX
Yin et al.(2017)
DLX6_eDBD_Methyl-HT-SELEX_1 		0.652 0.368
DLX6
M04907_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
DLX6_eDBD_Methyl-HT-SELEX_2 		0.652 0.368
Sebox
M02097_2.00 		Mus musculus
NHTTAATTAN
NTAATTAADN		 PBM
Weirauch et al.(2014)
pTH6379 		0.651 0.474
ESX1
M00292_2.00 		Homo sapiens
NNTAATNDN
NHNATTANN		 PBM
Barrera et al.(2016)
ESX1_REF 		0.649 0.421
ESX1
M03137_2.00 		Homo sapiens
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
ESX1_1 		0.649 0.421
ESX1
M03138_2.00 		Homo sapiens
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
ESX1_2 		0.649 0.421
ESX1
M05087_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
ESX1_eDBD_HT-SELEX 		0.649 0.421
ESX1
M05089_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
ESX1_FL_HT-SELEX 		0.649 0.421
ESX1
M05088_2.00 		Homo sapiens
NTAATTRR
YYAATTAN		 SELEX
Yin et al.(2017)
ESX1_eDBD_Methyl-HT-SELEX 		0.649 0.421
ESX1
M05090_2.00 		Homo sapiens
NTAATTRR
YYAATTAN		 SELEX
Yin et al.(2017)
ESX1_FL_Methyl-HT-SELEX 		0.649 0.421
C4B866_NEMVE
M02052_2.00 		Nematostella vectensis
NNTTAATTARNN
NNYTAATTAANN		 PBM
Weirauch et al.(2014)
pTH6176 		0.648 0.544
Alx3
M00402_2.00 		Mus musculus
WAATNDN
NHNATTW		 PBM
Berger et al.(2008)
Alx3_3418 		0.648 0.474
Alx1
M00471_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 PBM
Berger et al.(2008)
Cart1_0997 		0.648 0.474
Alx1
M00472_2.00 		Mus musculus
NTAATDDN
NHHATTAN		 PBM
Berger et al.(2008)
Cart1_1275 		0.648 0.474
Alx4
M00487_2.00 		Mus musculus
NTAATDDN
NHHATTAN		 PBM
Berger et al.(2008)
Alx4_1744 		0.648 0.474
ALX3
M03172_2.00 		Homo sapiens
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
ALX3_1 		0.648 0.474
ALX3
M03173_2.00 		Homo sapiens
NNTAATTRNN
NNYAATTANN		 SELEX
Jolma et al.(2013)
ALX3_2 		0.648 0.474
ALX3
M03174_2.00 		Homo sapiens
NTAATYNRATTAN
NTAATYNRATTAN		 SELEX
Jolma et al.(2013)
ALX3_3 		0.648 0.474
ALX4
M03079_2.00 		Homo sapiens
NTAATYNRRTTAN
NTAAYYNRATTAN		 SELEX
Jolma et al.(2013)
ALX4_1 		0.648 0.474
ALX1
M03226_2.00 		Homo sapiens
NTAATTRVRTTAN
NTAAYBYAATTAN		 SELEX
Jolma et al.(2013)
CART1_1 		0.648 0.474
Alx1
M03272_2.00 		Mus musculus
NNTAATTRRD
HYYAATTANN		 SELEX
Jolma et al.(2013)
Alx1_1 		0.648 0.474
Alx1
M03273_2.00 		Mus musculus
NTAATYNRATTAN
NTAATYNRATTAN		 SELEX
Jolma et al.(2013)
Alx1_2 		0.648 0.474
Alx4
M03278_2.00 		Mus musculus
NTAATYNRATTAN
NTAATYNRATTAN		 SELEX
Jolma et al.(2013)
Alx4_1 		0.648 0.474
ALX1
M05327_2.00 		Homo sapiens
TAATYTAATTA
TAATTARATTA		 SELEX
Yin et al.(2017)
ALX1_FL_HT-SELEX 		0.648 0.474
ALX3
M05195_2.00 		Homo sapiens
NTAATTRR
YYAATTAN		 SELEX
Yin et al.(2017)
ALX3_eDBD_HT-SELEX 		0.648 0.474
ALX3
M05198_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
ALX3_FL_HT-SELEX 		0.648 0.474
ALX4
M04917_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
ALX4_eDBD_HT-SELEX 		0.648 0.474
ALX1
M09160_2.00 		Homo sapiens
VTAATYRVATTA
TAATBYRATTAB		 Misc
Kulakovskiy et al.(2013)
ALX1_HUMAN.H11MO.0.B 		0.648 0.474
Alx1
M09201_2.00 		Mus musculus
VTAATYRVATTA
TAATBYRATTAB		 Misc
Kulakovskiy et al.(2013)
ALX1_MOUSE.H11MO.0.B 		0.648 0.474
ALX4
M10637_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ALX4_01 		0.648 0.474
ALX1
M10741_2.00 		Homo sapiens
VVHTAATKNNHATTABYN
NRVTAATDNNMATTADBB		 Transfac
Matys et al.(2006)
V$CART1_01 		0.648 0.474
ALX1
M05328_2.00 		Homo sapiens
TAATYTAATTA
TAATTARATTA		 SELEX
Yin et al.(2017)
ALX1_FL_Methyl-HT-SELEX 		0.648 0.474
ALX3
M05196_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
ALX3_eDBD_Methyl-HT-SELEX_1 		0.648 0.474
ALX3
M05197_2.00 		Homo sapiens
NTAAYBHN
NDVRTTAN		 SELEX
Yin et al.(2017)
ALX3_eDBD_Methyl-HT-SELEX_2 		0.648 0.474
ALX3
M05199_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
ALX3_FL_Methyl-HT-SELEX_1 		0.648 0.474
ALX3
M05200_2.00 		Homo sapiens
NTAAYGHN
NDCRTTAN		 SELEX
Yin et al.(2017)
ALX3_FL_Methyl-HT-SELEX_2 		0.648 0.474
ALX4
M04918_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
ALX4_eDBD_Methyl-HT-SELEX_1 		0.648 0.474
ALX4
M04919_2.00 		Homo sapiens
NTWAYGHN
NDCRTWAN		 SELEX
Yin et al.(2017)
ALX4_eDBD_Methyl-HT-SELEX_2 		0.648 0.474
CG32532
M03874_2.00 		Drosophila melanogaster
NTAAYBNVRTTAN
NTAAYBNVRTTAN		 SELEX
Nitta et al.(2015)
CG32532_1 		0.646 0.474
CG32532
M06547_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Mathelier et al.(2014)
MA0179.1 		0.646 0.474
CG32532
M06370_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Zhu et al.(2011)
CG32532_Cell_FBgn0052532 		0.646 0.474
CG32532
M06371_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
CG32532_SOLEXA_FBgn0052532 		0.646 0.474
al
M03776_2.00 		Drosophila melanogaster
TAAYBNVRTTA
TAAYBNVRTTA		 SELEX
Nitta et al.(2015)
al_1 		0.643 0.509
al
M06477_2.00 		Drosophila melanogaster
TAATTAA
TTAATTA		 B1H
Mathelier et al.(2014)
MA0208.1 		0.643 0.509
al
M06212_2.00 		Drosophila melanogaster
TAATTAA
TTAATTA		 B1H
Zhu et al.(2011)
Al_Cell_FBgn0000061 		0.643 0.509
al
M06213_2.00 		Drosophila melanogaster
NNYTAATTR
YAATTARNN		 B1H
Zhu et al.(2011)
Al_SOLEXA_FBgn0000061 		0.643 0.509
ARX
M00264_2.00 		Homo sapiens
NNWRATNNN
NNNATYWNN		 PBM
Barrera et al.(2016)
ARX_REF 		0.641 0.474
Arx
M00467_2.00 		Mus musculus
NTAATTDN
NHAATTAN		 PBM
Berger et al.(2008)
Arx_1738 		0.641 0.474
ARX
M03076_2.00 		Homo sapiens
NTAATYNRATTAN
NTAATYNRATTAN		 SELEX
Jolma et al.(2013)
ARX_1 		0.641 0.474
Arx
M03269_2.00 		Mus musculus
NTAATYNRATTAN
NTAATYNRATTAN		 SELEX
Jolma et al.(2013)
Arx_1 		0.641 0.474
CG2808
M03875_2.00 		Drosophila melanogaster
TAATYNSRTTA
TAAYSNRATTA		 SELEX
Nitta et al.(2015)
CG2808_1 		0.641 0.474
ARX
M04895_2.00 		Homo sapiens
BTAATTRR
YYAATTAV		 SELEX
Yin et al.(2017)
ARX_eDBD_HT-SELEX 		0.641 0.474
Arx
M10775_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ARX_05 		0.641 0.474
ARX
M04896_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
ARX_eDBD_Methyl-HT-SELEX 		0.641 0.474
DRGX
M03199_2.00 		Homo sapiens
NTAATTNRATTAN
NTAATYNAATTAN		 SELEX
Jolma et al.(2013)
DRGX_1 		0.641 0.456
DRGX
M05253_2.00 		Homo sapiens
NTAATTRR
YYAATTAN		 SELEX
Yin et al.(2017)
DRGX_eDBD_HT-SELEX 		0.641 0.456
Drgx
M10774_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PRRXL1_01 		0.641 0.456
ARX
M00260_2.00 		Homo sapiens
NMTAATTANNN
NNNTAATTAKN		 PBM
Barrera et al.(2016)
ARX_L343Q 		0.641 0.456
DRGX
M05254_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
DRGX_eDBD_Methyl-HT-SELEX 		0.641 0.456
ARX
M00261_2.00 		Homo sapiens
NNWRAYNNN
NNNRTYWNN		 PBM
Barrera et al.(2016)
ARX_P353L 		0.641 0.456
ARX
M00262_2.00 		Homo sapiens
ATAATTAT
ATAATTAT		 PBM
Barrera et al.(2016)
ARX_P353R 		0.641 0.456
hbn
M03813_2.00 		Drosophila melanogaster
HTAATYTAATTAD
HTAATTARATTAD		 SELEX
Nitta et al.(2015)
hbn_1 		0.640 0.474
hbn
M06506_2.00 		Drosophila melanogaster
TTAATTR
YAATTAA		 B1H
Mathelier et al.(2014)
MA0226.1 		0.640 0.474
hbn
M06291_2.00 		Drosophila melanogaster
TWAWTTR
YAAWTWA		 B1H
Zhu et al.(2011)
Hbn_Cell_FBgn0008636 		0.640 0.474
hbn
M06292_2.00 		Drosophila melanogaster
NHTAATTR
YAATTADN		 B1H
Zhu et al.(2011)
Hbn_SOLEXA_FBgn0008636 		0.640 0.474
Pph13
M03845_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
Pph13_1 		0.640 0.456
Pph13
M06522_2.00 		Drosophila melanogaster
NTAATTR
YAATTAN		 B1H
Mathelier et al.(2014)
MA0200.1 		0.640 0.456
Pph13
M06321_2.00 		Drosophila melanogaster
NHTAATTR
YAATTADN		 B1H
Zhu et al.(2011)
Pph13_Cell_FBgn0023489 		0.640 0.456
Pph13
M06322_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Zhu et al.(2011)
Pph13_SOLEXA_FBgn0023489 		0.640 0.456
PHOX2B
M00282_2.00 		Homo sapiens
TAATTRRY
RYYAATTA		 PBM
Barrera et al.(2016)
PHOX2B_REF 		0.640 0.439
Phox2a
M00400_2.00 		Mus musculus
NNHAAYNN
NNRTTDNN		 PBM
Berger et al.(2008)
Phox2a_3947 		0.640 0.439
Phox2b
M00401_2.00 		Mus musculus
NNHAAYNN
NNRTTDNN		 PBM
Berger et al.(2008)
Phox2b_3948 		0.640 0.439
PHOX2A
M03194_2.00 		Homo sapiens
TAATTRVRTTA
TAAYBYAATTA		 SELEX
Jolma et al.(2013)
PHOX2A_1 		0.640 0.439
PHOX2B
M03113_2.00 		Homo sapiens
TAATTRVRTTA
TAAYBYAATTA		 SELEX
Jolma et al.(2013)
PHOX2B_1 		0.640 0.439
PHOX2B
M03114_2.00 		Homo sapiens
TAATTRVRTTA
TAAYBYAATTA		 SELEX
Jolma et al.(2013)
PHOX2B_2 		0.640 0.439
PHOX2A
M05244_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
PHOX2A_eDBD_HT-SELEX 		0.640 0.439
PHOX2B
M05008_2.00 		Homo sapiens
BTAATYRV
BYRATTAV		 SELEX
Yin et al.(2017)
PHOX2B_eDBD_HT-SELEX 		0.640 0.439
PHOX2B
M05010_2.00 		Homo sapiens
TAATTWRATTA
TAATYWAATTA		 SELEX
Yin et al.(2017)
PHOX2B_FL_HT-SELEX 		0.640 0.439
Phox2a
M09564_2.00 		Mus musculus
NTAATBNRATTA
TAATYNVATTAN		 Misc
Heinz et al.(2010)
Neuron-Phox2a_GSE31456 		0.640 0.439
PHOX2B
M00279_2.00 		Homo sapiens
NVTAATTRMNN
NNKYAATTABN		 PBM
Barrera et al.(2016)
PHOX2B_R100L 		0.640 0.439
PHOX2B
M00280_2.00 		Homo sapiens
NNNHATAAWTDNN
NNHAWTTATDNNN		 PBM
Barrera et al.(2016)
PHOX2B_R141G 		0.640 0.439
PHOX2B
M00281_2.00 		Homo sapiens
NNNNNNNNRY
RYNNNNNNNN		 PBM
Barrera et al.(2016)
PHOX2B_R141Q 		0.640 0.439
PHOX2A
M05245_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
PHOX2A_eDBD_Methyl-HT-SELEX 		0.640 0.439
PHOX2B
M05009_2.00 		Homo sapiens
BTAATYRN
NYRATTAV		 SELEX
Yin et al.(2017)
PHOX2B_eDBD_Methyl-HT-SELEX 		0.640 0.439
PHOX2B
M05011_2.00 		Homo sapiens
TAATTHRATTA
TAATYDAATTA		 SELEX
Yin et al.(2017)
PHOX2B_FL_Methyl-HT-SELEX 		0.640 0.439
VSX1
M00269_2.00 		Homo sapiens
NNWAAYNNN
NNNRTTWNN		 PBM
Barrera et al.(2016)
VSX1_REF 		0.638 0.491
Vsx1
M00459_2.00 		Mus musculus
NNTAATDDN
NHHATTANN		 PBM
Berger et al.(2008)
Vsx1_1728 		0.638 0.491
Vsx1
M03267_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Vsx1_1 		0.638 0.491
VSX1
M00266_2.00 		Homo sapiens
NNTAAYNNN
NNNRTTANN		 PBM
Barrera et al.(2016)
VSX1_G160D 		0.638 0.491
VSX1
M00268_2.00 		Homo sapiens
NNWRAYNNN
NNNRTYWNN		 PBM
Barrera et al.(2016)
VSX1_R166Q 		0.638 0.491
PHDP
M03849_2.00 		Drosophila melanogaster
NTAATKNVATTAN
NTAATBNMATTAN		 SELEX
Nitta et al.(2015)
PHDP_1 		0.636 0.439
PHDP
M06525_2.00 		Drosophila melanogaster
HTAATTD
HAATTAD		 B1H
Mathelier et al.(2014)
MA0457.1 		0.636 0.439
PHDP
M06325_2.00 		Drosophila melanogaster
HTAATT
AATTAD		 B1H
Zhu et al.(2011)
PhdP_Cell_FBgn0025334 		0.636 0.439
PHDP
M06326_2.00 		Drosophila melanogaster
YTAATT
AATTAR		 B1H
Zhu et al.(2011)
PhdP_SOLEXA_FBgn0025334 		0.636 0.439
CG11294
M03855_2.00 		Drosophila melanogaster
TAATTVVATTA
TAATBBAATTA		 SELEX
Nitta et al.(2015)
CG11294_1 		0.635 0.439
CG11294
M03856_2.00 		Drosophila melanogaster
TAATTDVATTA
TAATBHAATTA		 SELEX
Nitta et al.(2015)
CG11294_2 		0.635 0.439
CG11294
M06531_2.00 		Drosophila melanogaster
TAATTAA
TTAATTA		 B1H
Mathelier et al.(2014)
MA0172.1 		0.635 0.439
CG11294
M06337_2.00 		Drosophila melanogaster
TAATTAA
TTAATTA		 B1H
Zhu et al.(2011)
CG11294_Cell_FBgn0030058 		0.635 0.439
CG11294
M06338_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
CG11294_SOLEXA_FBgn0030058 		0.635 0.439
VSX2
M00287_2.00 		Homo sapiens
NYTAATTARN
NYTAATTARN		 PBM
Barrera et al.(2016)
VSX2_REF 		0.635 0.474
VSX2
M03124_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX2_1 		0.635 0.474
VSX2
M05036_2.00 		Homo sapiens
CTAATTAN
NTAATTAG		 SELEX
Yin et al.(2017)
VSX2_eDBD_HT-SELEX 		0.635 0.474
VSX2
M05039_2.00 		Homo sapiens
GCYAATYWY
RWRATTRGC		 SELEX
Yin et al.(2017)
VSX2_FL_HT-SELEX 		0.635 0.474
Vsx2
M09180_2.00 		Mus musculus
NNRGCTAATTAR
YTAATTAGCYNN		 Misc
Kulakovskiy et al.(2013)
VSX2_MOUSE.H11MO.0.C 		0.635 0.474
VSX2
M10676_2.00 		Homo sapiens
HNNGCTAATTANBN
NVNTAATTAGCNND		 Transfac
Matys et al.(2006)
V$CHX10_01 		0.635 0.474
VSX2
M05037_2.00 		Homo sapiens
VYAATTRR
YYAATTRB		 SELEX
Yin et al.(2017)
VSX2_eDBD_Methyl-HT-SELEX_1 		0.635 0.474
VSX2
M05038_2.00 		Homo sapiens
NTAAYKHN
NDMRTTAN		 SELEX
Yin et al.(2017)
VSX2_eDBD_Methyl-HT-SELEX_2 		0.635 0.474
VSX2
M05040_2.00 		Homo sapiens
NTAAYKVN
NBMRTTAN		 SELEX
Yin et al.(2017)
VSX2_FL_Methyl-HT-SELEX_1 		0.635 0.474
VSX2
M05041_2.00 		Homo sapiens
GCYAATYWY
RWRATTRGC		 SELEX
Yin et al.(2017)
VSX2_FL_Methyl-HT-SELEX_2 		0.635 0.474
VSX2
M00285_2.00 		Homo sapiens
NDTWTATTHNNN
NNNDAATAWAHN		 PBM
Barrera et al.(2016)
VSX2_R200P 		0.635 0.456
VSX2
M00286_2.00 		Homo sapiens
YRWKWNN
NNWMWYR		 PBM
Barrera et al.(2016)
VSX2_R200Q 		0.635 0.456
Vsx2
M02130_2.00 		Drosophila melanogaster
TTAATTAB
VTAATTAA		 PBM
Weirauch et al.(2014)
pTH6195 		0.633 0.456
Vsx2
M03880_2.00 		Drosophila melanogaster
NTAATTRN
NYAATTAN		 SELEX
Nitta et al.(2015)
Vsx2_1 		0.633 0.456
Vsx2
M03881_2.00 		Drosophila melanogaster
HRAYNVNNTRATKD
HMATYANNBNRTYD		 SELEX
Nitta et al.(2015)
Vsx2_2 		0.633 0.456
Vsx2
M06553_2.00 		Drosophila melanogaster
KTTAATTAG
CTAATTAAM		 B1H
Mathelier et al.(2014)
MA0180.1 		0.633 0.456
Vsx2
M06382_2.00 		Drosophila melanogaster
KTTAATTAG
CTAATTAAM		 B1H
Zhu et al.(2011)
CG33980_Cell_FBgn0053980 		0.633 0.456
Vsx2
M06383_2.00 		Drosophila melanogaster
NNTAATTRRN
NYYAATTANN		 B1H
Zhu et al.(2011)
CG33980_SOLEXA_2_0_FBgn0053980 		0.633 0.456
Vsx2
M06384_2.00 		Drosophila melanogaster
NNTAATKDN
NHMATTANN		 B1H
Zhu et al.(2011)
CG33980_SOLEXA_2_10_FBgn0053980 		0.633 0.456
Vsx2
M06385_2.00 		Drosophila melanogaster
NHTAATTR
YAATTADN		 B1H
Zhu et al.(2011)
CG33980_SOLEXA_FBgn0053980 		0.633 0.456
ceh-23
M00671_2.00 		Caenorhabditis elegans
HTAATTRNNN
NNNYAATTAD		 PBM
Narasimhan et al.(2015)
pTH9478 		0.631 0.421
mixl1.S
M02233_2.00 		Xenopus laevis
NHTAATTAANN
NNTTAATTADN		 PBM
Weirauch et al.(2014)
pTH6163 		0.629 0.439
Uncx
M00443_2.00 		Mus musculus
NTAATNDN
NHNATTAN		 PBM
Berger et al.(2008)
Uncx4 		0.628 0.439
uncx
M02111_2.00 		Tetraodon nigroviridis
NNTAATTRN
NYAATTANN		 PBM
Weirauch et al.(2014)
pTH5474 		0.628 0.439
UNCX
M03191_2.00 		Homo sapiens
NWAATTVVRTHWN
NWDAYBBAATTWN		 SELEX
Jolma et al.(2013)
UNCX_1 		0.628 0.439
UNCX
M03192_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
UNCX_2 		0.628 0.439
Uncx
M03264_2.00 		Mus musculus
NTAATTVRATTAN
NTAATYBAATTAN		 SELEX
Jolma et al.(2013)
Uncx_1 		0.628 0.439
Uncx
M03265_2.00 		Mus musculus
NTAATTRR
YYAATTAN		 SELEX
Jolma et al.(2013)
Uncx_2 		0.628 0.439
UNCX
M05240_2.00 		Homo sapiens
NYAATTRV
BYAATTRN		 SELEX
Yin et al.(2017)
UNCX_eDBD_HT-SELEX 		0.628 0.439
UNCX
M05241_2.00 		Homo sapiens
NYRRYKNN
NNMRYYRN		 SELEX
Yin et al.(2017)
UNCX_eDBD_Methyl-HT-SELEX 		0.628 0.439
SHOX
M02095_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 PBM
Weirauch et al.(2014)
pTH5805 		0.627 0.456
Shox2
M00439_2.00 		Mus musculus
NTAATDDN
NHHATTAN		 PBM
Berger et al.(2008)
Shox2_2641 		0.627 0.456
SHOX
M03232_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
SHOX_1 		0.627 0.456
SHOX2
M03204_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Jolma et al.(2013)
SHOX2_1 		0.627 0.456
Shox2
M03263_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Shox2_1 		0.627 0.456
CG5369
M03876_2.00 		Drosophila melanogaster
TAATTHVATTA
TAATBDAATTA		 SELEX
Nitta et al.(2015)
CG5369_1 		0.627 0.456
CG5369
M03877_2.00 		Drosophila melanogaster
TAATTRNNTAATBN
NVATTANNYAATTA		 SELEX
Nitta et al.(2015)
CG5369_2 		0.627 0.456
CG5369
M03878_2.00 		Drosophila melanogaster
TAATTVRATWA
TWATYBAATTA		 SELEX
Nitta et al.(2015)
CG5369_3 		0.627 0.456
SHOX
M05366_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_HT-SELEX 		0.627 0.456
Shox2
M10772_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SHOX2_05 		0.627 0.456
SHOX
M05367_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_1 		0.627 0.456
SHOX
M05368_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_2 		0.627 0.456
VSX1
M00267_2.00 		Homo sapiens
NNHAAYNNN
NNNRTTDNN		 PBM
Barrera et al.(2016)
VSX1_Q175H 		0.626 0.474
Q9BJW6_9CNID
M02215_2.00 		Sarsia sp. Long Island Sound
NBTAATTAVN
NBTAATTAVN		 PBM
Weirauch et al.(2014)
pTH6287 		0.626 0.386
eve
M00556_2.00 		Drosophila melanogaster
NNTAATTARN
NYTAATTANN		 PBM
Busser et al.(2012a)
Eve 		0.625 0.386
eve
M02115_2.00 		Drosophila melanogaster
NTAATNDNN
NNHNATTAN		 PBM
Weirauch et al.(2014)
pTH6436 		0.625 0.386
eve
M03794_2.00 		Drosophila melanogaster
VYTAATKASN
NSTMATTARB		 SELEX
Nitta et al.(2015)
eve_1 		0.625 0.386
eve
M06486_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Mathelier et al.(2014)
MA0221.1 		0.625 0.386
eve
M06240_2.00 		Drosophila melanogaster
DYTAATKA
TMATTARH		 B1H
Zhu et al.(2011)
Eve_Cell_FBgn0000606 		0.625 0.386
eve
M06241_2.00 		Drosophila melanogaster
HKBTAAYNDTKY
RMAHNRTTAVMD		 B1H
Zhu et al.(2011)
eve_FlyReg_FBgn0000606 		0.625 0.386
eve
M06242_2.00 		Drosophila melanogaster
NYTAATKA
TMATTARN		 B1H
Zhu et al.(2011)
Eve_SOLEXA_FBgn0000606 		0.625 0.386
eve
M09678_2.00 		Drosophila melanogaster
NKHTAATKD
HMATTADMN		 Misc
Kulakovskiy et al.(2009)
eve 		0.625 0.386
eve
M10786_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$EVE_Q6 		0.625 0.386
vsx2
M02079_2.00 		Danio rerio
NNYTAATTARN
NYTAATTARNN		 PBM
Weirauch et al.(2014)
pTH6221 		0.623 0.456
Meox1
M00384_2.00 		Mus musculus
NTRATKRNN
NNYMATYAN		 PBM
Berger et al.(2008)
Meox1_2310 		0.621 0.404
MEOX1
M03077_2.00 		Homo sapiens
NNTAATTASN
NSTAATTANN		 SELEX
Jolma et al.(2013)
MEOX1_1 		0.621 0.404
MEOX1
M04901_2.00 		Homo sapiens
NTDAYGHB
VDCRTHAN		 SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_1 		0.621 0.404
MEOX1
M04902_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_2 		0.621 0.404
MEOX1
M04903_2.00 		Homo sapiens
NTAAYGWB
VWCRTTAN		 SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_1 		0.621 0.404
MEOX1
M04904_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_2 		0.621 0.404
btn
M03832_2.00 		Drosophila melanogaster
NNTAATKANB
VNTMATTANN		 SELEX
Nitta et al.(2015)
btn_1 		0.621 0.386
btn
M03833_2.00 		Drosophila melanogaster
VNTAATKABN
NVTMATTANB		 SELEX
Nitta et al.(2015)
btn_2 		0.621 0.386
btn
M06515_2.00 		Drosophila melanogaster
DTAATKA
TMATTAH		 B1H
Mathelier et al.(2014)
MA0215.1 		0.621 0.386
btn
M06307_2.00 		Drosophila melanogaster
NDTAATKA
TMATTAHN		 B1H
Zhu et al.(2011)
Btn_Cell_FBgn0014949 		0.621 0.386
btn
M06308_2.00 		Drosophila melanogaster
HTAATKA
TMATTAD		 B1H
Zhu et al.(2011)
Btn_SOLEXA_FBgn0014949 		0.621 0.386
HOXA2
M02083_2.00 		Homo sapiens
NNNDHHNNN
NNNDDHNNN		 PBM
Weirauch et al.(2014)
pTH5887 		0.621 0.368
Hoxa2
M00403_2.00 		Mus musculus
NTAATKRNN
NNYMATTAN		 PBM
Berger et al.(2008)
Hoxa2_3079 		0.621 0.368
HOXA2
M03097_2.00 		Homo sapiens
NBTAATKRNN
NNYMATTAVN		 SELEX
Jolma et al.(2013)
HOXA2_1 		0.621 0.368
HOXB2
M03213_2.00 		Homo sapiens
NNTAATKRNN
NNYMATTANN		 SELEX
Jolma et al.(2013)
HOXB2_1 		0.621 0.368
Hoxa2
M03251_2.00 		Mus musculus
NNTAATKRNN
NNYMATTANN		 SELEX
Jolma et al.(2013)
Hoxa2_1 		0.621 0.368
pb
M03872_2.00 		Drosophila melanogaster
NTRAYKRY
RYMRTYAN		 SELEX
Nitta et al.(2015)
pb_1 		0.621 0.368
HOXA2
M04962_2.00 		Homo sapiens
NTAATKRV
BYMATTAN		 SELEX
Yin et al.(2017)
HOXA2_eDBD_HT-SELEX 		0.621 0.368
HOXA2
M04965_2.00 		Homo sapiens
NTAATKAB
VTMATTAN		 SELEX
Yin et al.(2017)
HOXA2_FL_HT-SELEX 		0.621 0.368
HOXB2
M05292_2.00 		Homo sapiens
BTAATKRV
BYMATTAV		 SELEX
Yin et al.(2017)
HOXB2_eDBD_HT-SELEX 		0.621 0.368
pb
M06545_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Mathelier et al.(2014)
MA0238.1 		0.621 0.368
pb
M06366_2.00 		Drosophila melanogaster
BYTAATKA
TMATTARV		 B1H
Zhu et al.(2011)
Pb_Cell_FBgn0051481 		0.621 0.368
pb
M06367_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Zhu et al.(2011)
Pb_SOLEXA_FBgn0051481 		0.621 0.368
Hoxa2
M09566_2.00 		Mus musculus
DTGATKGATKDB
VHMATCMATCAH		 Misc
Heinz et al.(2010)
mES-Hoxa2_Donaldson_et_al. 		0.621 0.368
HOXA2
M04963_2.00 		Homo sapiens
NTAATTAN
NTAATTAN		 SELEX
Yin et al.(2017)
HOXA2_eDBD_Methyl-HT-SELEX_1 		0.621 0.368
HOXA2
M04964_2.00 		Homo sapiens
HTAAYGAB
VTCRTTAD		 SELEX
Yin et al.(2017)
HOXA2_eDBD_Methyl-HT-SELEX_2 		0.621 0.368
HOXA2
M04966_2.00 		Homo sapiens
NTAATKAB
VTMATTAN		 SELEX
Yin et al.(2017)
HOXA2_FL_Methyl-HT-SELEX_1 		0.621 0.368
HOXA2
M04967_2.00 		Homo sapiens
HTAAYGAB
VTCRTTAD		 SELEX
Yin et al.(2017)
HOXA2_FL_Methyl-HT-SELEX_2 		0.621 0.368
HOXB2
M05293_2.00 		Homo sapiens
NTAATKRN
NYMATTAN		 SELEX
Yin et al.(2017)
HOXB2_eDBD_Methyl-HT-SELEX_1 		0.621 0.368
HOXB2
M05294_2.00 		Homo sapiens
HTAAYGAB
VTCRTTAD		 SELEX
Yin et al.(2017)
HOXB2_eDBD_Methyl-HT-SELEX_2 		0.621 0.368
Vsx1
M02129_2.00 		Drosophila melanogaster
VTTAATTRR
YYAATTAAB		 PBM
Weirauch et al.(2014)
pTH5821 		0.620 0.456
Vsx1
M03879_2.00 		Drosophila melanogaster
NTAATTRV
BYAATTAN		 SELEX
Nitta et al.(2015)
Vsx1_1 		0.620 0.456
Vsx1
M06552_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Mathelier et al.(2014)
MA0181.1 		0.620 0.456
Vsx1
M06380_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Zhu et al.(2011)
CG4136_Cell_FBgn0029775 		0.620 0.456
Vsx1
M06381_2.00 		Drosophila melanogaster
HTAATTR
YAATTAD		 B1H
Zhu et al.(2011)
CG4136_SOLEXA_FBgn0029775 		0.620 0.456
repo
M03826_2.00 		Drosophila melanogaster
VTTAATTARB
VYTAATTAAB		 SELEX
Nitta et al.(2015)
repo_1 		0.619 0.491
repo
M03827_2.00 		Drosophila melanogaster
VKYAATTRRN
NYYAATTRMB		 SELEX
Nitta et al.(2015)
repo_2 		0.619 0.491
repo
M03828_2.00 		Drosophila melanogaster
VBYAATTRVNNBYAATTRVB
VBYAATTRVNNBYAATTRVB		 SELEX
Nitta et al.(2015)
repo_3 		0.619 0.491
repo
M06511_2.00 		Drosophila melanogaster
TTAATTA
TAATTAA		 B1H
Mathelier et al.(2014)
MA0240.1 		0.619 0.491
repo
M06301_2.00 		Drosophila melanogaster
DTTAATTA
TAATTAAH		 B1H
Zhu et al.(2011)
Repo_Cell_FBgn0011701 		0.619 0.491
repo
M06302_2.00 		Drosophila melanogaster
YTAATTR
YAATTAR		 B1H
Zhu et al.(2011)
Repo_SOLEXA_FBgn0011701 		0.619 0.491
KLLA0_D10043g
M02140_2.00 		Kluyveromyces lactis
NNNNWWNNNN
NNNNWWNNNN		 PBM
Weirauch et al.(2014)
pTH6070 		0.616 0.386
ISX
M00319_2.00 		Homo sapiens
DTAATTRK
MYAATTAH		 PBM
Barrera et al.(2016)
ISX_REF 		0.612 0.421
ISX
M03218_2.00 		Homo sapiens
NTAATTARATTAN
NTAATYTAATTAN		 SELEX
Jolma et al.(2013)
ISX_1 		0.612 0.421
ISX
M03219_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Jolma et al.(2013)
ISX_2 		0.612 0.421
ISX
M03220_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
ISX_3 		0.612 0.421
ISX
M05304_2.00 		Homo sapiens
BTAATTRG
CYAATTAV		 SELEX
Yin et al.(2017)
ISX_eDBD_HT-SELEX 		0.612 0.421
ISX
M05307_2.00 		Homo sapiens
YTAATTRS
SYAATTAR		 SELEX
Yin et al.(2017)
ISX_FL_HT-SELEX 		0.612 0.421
ISX
M05305_2.00 		Homo sapiens
NTAATTAG
CTAATTAN		 SELEX
Yin et al.(2017)
ISX_eDBD_Methyl-HT-SELEX_1 		0.612 0.421
ISX
M05306_2.00 		Homo sapiens
HTAAYGHN
NDCRTTAD		 SELEX
Yin et al.(2017)
ISX_eDBD_Methyl-HT-SELEX_2 		0.612 0.421
ISX
M05308_2.00 		Homo sapiens
YTAATTRS
SYAATTAR		 SELEX
Yin et al.(2017)
ISX_FL_Methyl-HT-SELEX_1 		0.612 0.421
ISX
M05309_2.00 		Homo sapiens
HTAAYGHN
NDCRTTAD		 SELEX
Yin et al.(2017)
ISX_FL_Methyl-HT-SELEX_2 		0.612 0.421
Isx
M00452_2.00 		Mus musculus
NNHDATNN
NNATHDNN		 PBM
Berger et al.(2008)
Isx_3445 		0.612 0.404
exex
M03871_2.00 		Drosophila melanogaster
NNNNYAATTNNYDN
NHRNNAATTRNNNN		 SELEX
Nitta et al.(2015)
exex_1 		0.611 0.368
exex
M06544_2.00 		Drosophila melanogaster
BTAATTA
TAATTAV		 B1H
Mathelier et al.(2014)
MA0224.1 		0.611 0.368
exex
M06364_2.00 		Drosophila melanogaster
TAATTAV
BTAATTA		 B1H
Zhu et al.(2011)
Exex_Cell_FBgn0041156 		0.611 0.368
exex
M06365_2.00 		Drosophila melanogaster
TAATBR
YVATTA		 B1H
Zhu et al.(2011)
Exex_SOLEXA_FBgn0041156 		0.611 0.368
Mnx1
M00388_2.00 		Mus musculus
NTAATBDNNN
NNNHVATTAN		 PBM
Berger et al.(2008)
Hlxb9_3422 		0.611 0.351
MNX1
M03143_2.00 		Homo sapiens
NHTAATTRNH
DNYAATTADN		 SELEX
Jolma et al.(2013)
MNX1_1 		0.611 0.351
MNX1
M05126_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MNX1_eDBD_HT-SELEX 		0.611 0.351
MNX1
M05127_2.00 		Homo sapiens
HTAAYGHB
VDCRTTAD		 SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_1 		0.611 0.351
MNX1
M05128_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_2 		0.611 0.351
ceh-51
M00678_2.00 		Caenorhabditis elegans
NNDAKDRNN
NNYHMTHNN		 PBM
Narasimhan et al.(2015)
pTH9353 		0.609 0.404
Smp_158000
M02170_2.00 		Schistosoma mansoni
TTAATTRG
CYAATTAA		 PBM
Weirauch et al.(2014)
pTH5672 		0.608 0.386
LHX2
M02085_2.00 		Homo sapiens
NNNYAAHDDN
NHHDTTRNNN		 PBM
Weirauch et al.(2014)
pTH5812 		0.607 0.474
Lhx2
M00380_2.00 		Mus musculus
NTAATKRN
NYMATTAN		 PBM
Berger et al.(2008)
Lhx2_0953 		0.607 0.474
Lhx9
M00406_2.00 		Mus musculus
NTAATDRN
NYHATTAN		 PBM
Berger et al.(2008)
Lhx9_3492 		0.607 0.474
LHX2
M03106_2.00 		Homo sapiens
NNTAATTAGN
NCTAATTANN		 SELEX
Jolma et al.(2013)
LHX2_1 		0.607 0.474
LHX2
M03107_2.00 		Homo sapiens
YAATTANVCTAATTR
YAATTAGBNTAATTR		 SELEX
Jolma et al.(2013)
LHX2_2 		0.607 0.474
LHX9
M03163_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
LHX9_1 		0.607 0.474
LHX9
M03164_2.00 		Homo sapiens
TAATTRGYMATTA
TAATKRCYAATTA		 SELEX
Jolma et al.(2013)
LHX9_2 		0.607 0.474
LHX9
M05170_2.00 		Homo sapiens
YTAATTRG
CYAATTAR		 SELEX
Yin et al.(2017)
LHX9_eDBD_HT-SELEX 		0.607 0.474
LHX9
M05173_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
LHX9_FL_HT-SELEX 		0.607 0.474
LHX2
M09136_2.00 		Homo sapiens
NBYTAATTRVNB
VNBYAATTARVN		 Misc
Kulakovskiy et al.(2013)
LHX2_HUMAN.H11MO.0.A 		0.607 0.474
Lhx2
M09169_2.00 		Mus musculus
NNTAATKRGN
NCYMATTANN		 Misc
Kulakovskiy et al.(2013)
LHX2_MOUSE.H11MO.0.A 		0.607 0.474
Lhx2
M09562_2.00 		Mus musculus
NYTAATTA
TAATTARN		 Misc
Heinz et al.(2010)
HFSC-Lhx2_GSE48068 		0.607 0.474
LHX2
M10655_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX2_Q4 		0.607 0.474
LHX2
M10656_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX2_Q6 		0.607 0.474
LHX9
M05171_2.00 		Homo sapiens
YTAATTRS
SYAATTAR		 SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_1 		0.607 0.474
LHX9
M05172_2.00 		Homo sapiens
HTAACGAB
VTCGTTAD		 SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_2 		0.607 0.474
LHX9
M05174_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_1 		0.607 0.474
LHX9
M05175_2.00 		Homo sapiens
HTAACGAB
VTCGTTAD		 SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_2 		0.607 0.474
PHOX2B
M00278_2.00 		Homo sapiens
NNNNNRY
RYNNNNN		 PBM
Barrera et al.(2016)
PHOX2B_Q143R 		0.607 0.421
ap
M06478_2.00 		Drosophila melanogaster
YTAATKA
TMATTAR		 B1H
Mathelier et al.(2014)
MA0209.1 		0.606 0.456
ap
M06214_2.00 		Drosophila melanogaster
VYTAATKA
TMATTARB		 B1H
Zhu et al.(2011)
Ap_Cell_FBgn0000099 		0.606 0.456
ap
M06215_2.00 		Drosophila melanogaster
BAATHA
TDATTV		 B1H
Zhu et al.(2011)
ap_FlyReg_FBgn0000099 		0.606 0.456
ap
M06216_2.00 		Drosophila melanogaster
HTAATKR
YMATTAD		 B1H
Zhu et al.(2011)
Ap_SOLEXA_FBgn0000099 		0.606 0.456
ap
M10781_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$AP_Q6 		0.606 0.456
P79681_ACIBE
M02200_2.00 		Acipenser baerii
DTAATTRB
VYAATTAH		 PBM
Weirauch et al.(2014)
pTH6156 		0.601 0.439
MSX2
M00290_2.00 		Homo sapiens
WDATNDNN
NNHNATHW		 PBM
Barrera et al.(2016)
MSX2_REF 		0.600 0.316
Msx2
M00414_2.00 		Mus musculus
HRATKRNN
NNYMATYD		 PBM
Berger et al.(2008)
Msx2_3449 		0.600 0.316
Msx3
M00429_2.00 		Mus musculus
TAATKDNN
NNHMATTA		 PBM
Berger et al.(2008)
Msx3_3206 		0.600 0.316
Msx1
M00501_2.00 		Mus musculus
NHDATND
HNATHDN		 PBM
Berger et al.(2008)
Msx1_3031 		0.600 0.316
Dr
M00555_2.00 		Drosophila melanogaster
TAATTRNN
NNYAATTA		 PBM
Busser et al.(2012a)
Msh 		0.600 0.316
MSX1
M03184_2.00 		Homo sapiens
TAATTRBHHNHTAATTRN
NYAATTADNDDVYAATTA		 SELEX
Jolma et al.(2013)
MSX1_1 		0.600 0.316
MSX1
M03185_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
MSX1_2 		0.600 0.316
MSX1
M03186_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
MSX1_3 		0.600 0.316
MSX2
M03127_2.00 		Homo sapiens
TAATTRBHWKWTAATTGV
BCAATTAWMWDVYAATTA		 SELEX
Jolma et al.(2013)
MSX2_1 		0.600 0.316
MSX2
M03128_2.00 		Homo sapiens
NTAATTGB
VCAATTAN		 SELEX
Jolma et al.(2013)
MSX2_2 		0.600 0.316
Msx3
M03255_2.00 		Mus musculus
TAATTGSHHNNTAATTRN
NYAATTANNDDSCAATTA		 SELEX
Jolma et al.(2013)
Msx3_1 		0.600 0.316
Msx3
M03256_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Msx3_2 		0.600 0.316
MSX1
M05221_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_HT-SELEX 		0.600 0.316
MSX1
M05224_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_FL_HT-SELEX 		0.600 0.316
MSX2
M05060_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_HT-SELEX 		0.600 0.316
Dr
M06482_2.00 		Drosophila melanogaster
TAATTGS
SCAATTA		 B1H
Mathelier et al.(2014)
MA0188.1 		0.600 0.316
Dr
M06229_2.00 		Drosophila melanogaster
TAATTGSHB
VDSCAATTA		 B1H
Zhu et al.(2011)
Dr_Cell_FBgn0000492 		0.600 0.316
Dr
M06230_2.00 		Drosophila melanogaster
TAATTR
YAATTA		 B1H
Zhu et al.(2011)
Dr_SOLEXA_FBgn0000492 		0.600 0.316
MSX1
M10715_2.00 		Homo sapiens
HNBTWWNTG
CANWWAVND		 Transfac
Matys et al.(2006)
V$MSX1_01 		0.600 0.316
MSX1
M10716_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX1_Q5_01 		0.600 0.316
MSX1
M10717_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX1_Q5 		0.600 0.316
MSX2
M10677_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX2_Q3 		0.600 0.316
MSX2
M10678_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MSX2_Q6 		0.600 0.316
MSX2
M00288_2.00 		Homo sapiens
NTAATNDN
NHNATTAN		 PBM
Barrera et al.(2016)
MSX2_P148H 		0.600 0.316
MSX1
M05222_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_1 		0.600 0.316
MSX1
M05223_2.00 		Homo sapiens
NTWAYGMB
VKCRTWAN		 SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_2 		0.600 0.316
MSX1
M05225_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_1 		0.600 0.316
MSX1
M05226_2.00 		Homo sapiens
NTWAYGWB
VWCRTWAN		 SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_2 		0.600 0.316
MSX2
M05061_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_1 		0.600 0.316
MSX2
M05062_2.00 		Homo sapiens
NTAAYGAB
VTCRTTAN		 SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_2 		0.600 0.316
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000034874 Homeodomain 216 272

Links

Other Homeodomain family TFs
Other Ciona intestinalis TFs

4083 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLOTRDRAFT_137651 Gloeophyllum trabeum GLOTRDRAFT_137651 N
PaG_02922 Pseudozyma aphidis PaG_02922 I
PHSY_000207 Pseudozyma hubeiensis PHSY_000207 I
PSEUBRA_SCAF2g02944 Pseudozyma brasiliensis PSEUBRA_SCAF2g02944 I
sr10662 Sporisorium reilianum sr10662 I
UHOR_02856 Ustilago hordei UHOR_02856 N
UM01925 Ustilago maydis UM01925 I