ENSXMAG00000013481 (Xiphophorus maculatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSXMAG00000013481 T217235_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.866 0.982
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.866 0.982
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.866 0.982
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.866 0.982
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.866 0.982
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.866 0.982
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.866 0.982
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.866 0.982
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.866 0.982
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.866 0.982
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.864 0.964
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.864 0.964
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.864 0.964
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.864 0.964
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.864 0.964
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.864 0.964
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.864 0.964
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.864 0.964
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.864 0.927
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.864 0.927
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.864 0.927
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.864 0.927
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.864 0.927
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.864 0.927
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.864 0.927
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.864 0.927
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.708 0.709
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.708 0.709
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.708 0.709
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.708 0.709
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.708 0.709
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.708 0.673
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.708 0.673
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.708 0.673
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.708 0.673
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.708 0.673
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.708 0.655
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.708 0.655
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.708 0.655
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.708 0.655
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.664 0.618
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000013509 Homeodomain 127 181

Links

Other Homeodomain family TFs
Other Xiphophorus maculatus TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00140p00061590 Amborella trichopoda AMTR_s00140p00061590 N
BGIOSGA015622 Oryza indica BGIOSGA015622 N
BGIOSGA026480 Oryza indica BGIOSGA026480 N
cassava27114.m1 Manihot esculenta cassava27114.m1 N
cassava28521.m1 Manihot esculenta cassava28521.m1 N
Ca_07000 Cicer arietinum Ca_07000 N
chr3.CM0070.360.nc Lotus japonicus chr3.CM0070.360.nc N
Ciclev10029807m.g Citrus clementina Ciclev10029807m.g N
Ciclev10029984m.g Citrus clementina Ciclev10029984m.g N
Cla001892 Citrullus lanatus Cla001892 N
Cucsa.200410 Cucumis sativus Cucsa.200410 N
Eucgr.B03926 Eucalyptus grandis Eucgr.B03926 N
Eucgr.J00391 Eucalyptus grandis Eucgr.J00391 N
gene01102-v1.0-hybrid Fragaria vesca gene01102-v1.0-hybrid N
GLYMA12G30285 Glycine max GLYMA12G30285 N
GLYMA13G39610 Glycine max GLYMA13G39610 N
Gorai.006G104700 Gossypium raimondii Gorai.006G104700 N
Gorai.009G090000 Gossypium raimondii Gorai.009G090000 N
GSMUA_Achr11G02230_001 Musa acuminata GSMUA_Achr11G02230_001 N
GSMUA_Achr1G15330_001 Musa acuminata GSMUA_Achr1G15330_001 N
LPERR08G20460 Leersia perrieri LPERR08G20460 N
MDP0000224892 Malus domestica MDP0000224892 N
MDP0000610922 Malus domestica MDP0000610922 N
mgf025993m Mimulus guttatus mgf025993m N
MLOC_23443 Hordeum vulgare MLOC_23443 N
OB08G30610 Oryza brachyantha OB08G30610 N
OBART04G02230 Oryza barthii OBART04G02230 N
OGLUM04G01880 Oryza glumaepatula OGLUM04G01880 N
OGLUM08G25260 Oryza glumaepatula OGLUM08G25260 N
OLONG_023180 Oryza longistaminata OLONG_023180 N
OMERI04G02190 Oryza meridionalis OMERI04G02190 N
OMERI08G18590 Oryza meridionalis OMERI08G18590 N
ONIVA08G18580 Oryza nivara ONIVA08G18580 N
OPUNC04G02200 Oryza punctata OPUNC04G02200 N
OPUNC08G21710 Oryza punctata OPUNC08G21710 N
orange1.1g042026m.g Citrus sinensis orange1.1g042026m.g N
orange1.1g044007m.g Citrus sinensis orange1.1g044007m.g N
ORGLA04G0016600 Oryza glaberrima ORGLA04G0016600 N
ORUFI04G02970 Oryza rufipogon ORUFI04G02970 N
ORUFI08G26260 Oryza rufipogon ORUFI08G26260 N
OS04G0165200 Oryza sativa OS04G0165200 N
OS08G0562300 Oryza sativa OS08G0562300 N
Pavir.Fa00049 Panicum virgatum Pavir.Fa00049 N
Pavir.Fb02219 Panicum virgatum Pavir.Fb02219 N
PGSC0003DMG400000419 Solanum tuberosum PGSC0003DMG400000419 N
Pm001162 Prunus mume Pm001162 N
POPTR_0004s22670 Populus trichocarpa POPTR_0004s22670 N
PRUPE_ppa019036mg Prunus persica PRUPE_ppa019036mg N
SapurV1A.0360s0140 Salix purpurea SapurV1A.0360s0140 N
Sb07g023890 Sorghum bicolor Sb07g023890 N
Si013894m.g Setaria italica Si013894m.g N
Solyc11g066420.1 Solanum lycopersicum Solyc11g066420.1 N
TCM_041585 Theobroma cacao TCM_041585 N
TRIUR3_12142 Triticum urartu TRIUR3_12142 N