MTR_0198s0030 (Medicago truncatula)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 MTR_0198s0030 T220759_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.824 0.825
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.824 0.825
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.824 0.825
HDG1
M06917_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a 		0.819 0.772
HDG1
M06918_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a 		0.819 0.772
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.806 0.789
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.806 0.789
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.800 0.754
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.784 0.754
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.784 0.754
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.778 0.737
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.778 0.737
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.778 0.737
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.778 0.737
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.769 0.667
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH16395 Homeodomain 56 112

Links

Other Homeodomain family TFs
Other Medicago truncatula TFs

618 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I
BGIOSGA030113 Oryza indica BGIOSGA030113 I
BGIOSGA034613 Oryza indica BGIOSGA034613 N
BGIOSGA036757 Oryza indica BGIOSGA036757 N
Bo2g095820 Brassica oleracea Bo2g095820 I
Bo5g068250 Brassica oleracea Bo5g068250 I
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I
Bra008459 Brassica rapa Bra008459 I
Bra023211 Brassica rapa Bra023211 I
Bra028918 Brassica rapa Bra028918 I
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I
Carubv10012720m.g Capsella rubella Carubv10012720m.g I
Carubv10021420m.g Capsella rubella Carubv10021420m.g I
Carubv10021860m.g Capsella rubella Carubv10021860m.g I
Carubv10022162m.g Capsella rubella Carubv10022162m.g I
Ca_18932 Cicer arietinum Ca_18932 I
Eucgr.K01289 Eucalyptus grandis Eucgr.K01289 I
GRMZM2G441031 Zea mays GRMZM2G441031 I
LPERR11G00960 Leersia perrieri LPERR11G00960 I
LPERR12G01070 Leersia perrieri LPERR12G01070 I
Lus10014177.g Linum usitatissimum Lus10014177.g I
OB05G17240 Oryza brachyantha OB05G17240 I
OBART11G01100 Oryza barthii OBART11G01100 N
OGLUM11G00850 Oryza glumaepatula OGLUM11G00850 I
OGLUM12G01400 Oryza glumaepatula OGLUM12G01400 N
OLONG_002978 Oryza longistaminata OLONG_002978 I
OMERI11G01520 Oryza meridionalis OMERI11G01520 N
ONIVA09G03360 Oryza nivara ONIVA09G03360 I
ONIVA11G01050 Oryza nivara ONIVA11G01050 N
ONIVA11G01230 Oryza nivara ONIVA11G01230 N
OPUNC11G00970 Oryza punctata OPUNC11G00970 N
OPUNC12G00970 Oryza punctata OPUNC12G00970 N
ORGLA11G0201900 Oryza glaberrima ORGLA11G0201900 N
ORGLA12G0007500 Oryza glaberrima ORGLA12G0007500 N
OS11G0117400 Oryza sativa OS11G0117400 N
OS12G0116600 Oryza sativa OS12G0116600 N
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I
Sb08g002570 Sorghum bicolor Sb08g002570 N
Si010832m.g Setaria italica Si010832m.g N
Si027360m.g Setaria italica Si027360m.g N
TCM_019689 Theobroma cacao TCM_019689 I
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I
WRKY38 Arabidopsis lyrata scaffold_602308.1 I
WRKY38 Arabidopsis thaliana AT5G22570 D
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I
WRKY67 Arabidopsis thaliana AT1G66550 I