OBART02G03860 (Oryza barthii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OBART02G03860 T221306_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.821 0.632
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.821 0.632
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.801 0.632
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.793 0.649
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.793 0.649
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.764 0.667
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.764 0.667
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.764 0.667
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.725 0.649
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.708 0.632
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.708 0.632
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART02G03860.1 Homeodomain 104 160

Links

Other Homeodomain family TFs
Other Oryza barthii TFs

693 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000742 Ricinus communis 29814.m000742 N 0.000
Bo5g136860 Brassica oleracea Bo5g136860 N 0.000
Bostr.19424s1045 Boechera stricta Bostr.19424s1045 N 0.000
Bra034867 Brassica rapa Bra034867 N 0.000
Cagra.1655s0059 Capsella grandiflora Cagra.1655s0059 N 0.000
Carubv10015898m.g Capsella rubella Carubv10015898m.g N 0.000
cassava20837.m1 Manihot esculenta cassava20837.m1 N 0.000
cassava41267.m1 Manihot esculenta cassava41267.m1 N 0.000
Ca_12464 Cicer arietinum Ca_12464 N 0.000
chr6.LjB02K20.190.nd Lotus japonicus chr6.LjB02K20.190.nd N 0.000
Ciclev10032862m.g Citrus clementina Ciclev10032862m.g N 0.000
Cucsa.136740 Cucumis sativus Cucsa.136740 N 0.000
Eucgr.G03078 Eucalyptus grandis Eucgr.G03078 N 0.000
evm.TU.supercontig_19.151 Carica papaya evm.TU.supercontig_19.151 N 0.000
gene21008-v1.0-hybrid Fragaria vesca gene21008-v1.0-hybrid N 0.000
GLYMA02G43220 Glycine max GLYMA02G43220 N 0.000
GLYMA11G35500 Glycine max GLYMA11G35500 N 0.000
GLYMA14G06270 Glycine max GLYMA14G06270 N 0.000
GLYMA18G02910 Glycine max GLYMA18G02910 N 0.000
Gorai.011G291500 Gossypium raimondii Gorai.011G291500 N 0.000
Gorai.013G016900 Gossypium raimondii Gorai.013G016900 N 0.000
LBD21 Vitis vinifera VIT_13s0067g01450 N 0.000
LBD21 Arabidopsis thaliana AT3G11090 N 0.000
LjSGA_139647.1 Lotus japonicus LjSGA_139647.1 N 0.000
Lus10028986.g Linum usitatissimum Lus10028986.g N 0.000
MDP0000220708 Malus domestica MDP0000220708 N 0.000
MDP0000943252 Malus domestica MDP0000943252 N 0.000
mgf019866m Mimulus guttatus mgf019866m N 0.000
MTR_3g071420 Medicago truncatula MTR_3g071420 N 0.000
MTR_5g083010 Medicago truncatula MTR_5g083010 N 0.000
orange1.1g036565m.g Citrus sinensis orange1.1g036565m.g N 0.000
PGSC0003DMG400027718 Solanum tuberosum PGSC0003DMG400027718 N 0.000
PK29334.1 Cannabis sativa PK29334.1 I 0.000
Pm018957 Prunus mume Pm018957 N 0.000
POPTR_0008s07150 Populus trichocarpa POPTR_0008s07150 N 0.000
POPTR_0010s19340 Populus trichocarpa POPTR_0010s19340 N 0.000
PRUPE_ppa012284mg Prunus persica PRUPE_ppa012284mg N 0.000
SapurV1A.0061s0510 Salix purpurea SapurV1A.0061s0510 N 0.000
SapurV1A.0650s0120 Salix purpurea SapurV1A.0650s0120 N 0.000
Solyc03g095940.1 Solanum lycopersicum Solyc03g095940.1 N 0.000
TCM_042466 Theobroma cacao TCM_042466 N 0.000
Thhalv10021674m.g Eutrema salsugineum Thhalv10021674m.g N 0.000