Carubv10015898m.g (Capsella rubella)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Carubv10015898m.g T246764_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015898m LOB 11 109

Links

Other LOB family TFs
Other Capsella rubella TFs

42 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD21 Arabidopsis thaliana AT3G11090 N 1.000
LBD21 Arabidopsis lyrata fgenesh2_kg.3__1152__AT3G11090.1 N 1.000
Bostr.19424s1045 Boechera stricta Bostr.19424s1045 N 1.000
Cagra.1655s0059 Capsella grandiflora Cagra.1655s0059 N 1.000
Thhalv10021674m.g Eutrema salsugineum Thhalv10021674m.g N 0.970
Bo5g136860 Brassica oleracea Bo5g136860 N 0.939
Bra034867 Brassica rapa Bra034867 N 0.939
TCM_042466 Theobroma cacao TCM_042466 N 0.838
Eucgr.G03078 Eucalyptus grandis Eucgr.G03078 N 0.828
PK29334.1 Cannabis sativa PK29334.1 I 0.828
LBD21 Vitis vinifera VIT_13s0067g01450 N 0.818
Ciclev10032862m.g Citrus clementina Ciclev10032862m.g N 0.818
gene21008-v1.0-hybrid Fragaria vesca gene21008-v1.0-hybrid N 0.818
Gorai.011G291500 Gossypium raimondii Gorai.011G291500 N 0.818
orange1.1g036565m.g Citrus sinensis orange1.1g036565m.g N 0.818
SapurV1A.0650s0120 Salix purpurea SapurV1A.0650s0120 N 0.818
GLYMA18G02910 Glycine max GLYMA18G02910 N 0.808
POPTR_0010s19340 Populus trichocarpa POPTR_0010s19340 N 0.808
evm.TU.supercontig_19.151 Carica papaya evm.TU.supercontig_19.151 N 0.808
chr6.LjB02K20.190.nd Lotus japonicus chr6.LjB02K20.190.nd N 0.808
GLYMA02G43220 Glycine max GLYMA02G43220 N 0.798
GLYMA11G35500 Glycine max GLYMA11G35500 N 0.798
GLYMA14G06270 Glycine max GLYMA14G06270 N 0.798
MTR_5g083010 Medicago truncatula MTR_5g083010 N 0.798
POPTR_0008s07150 Populus trichocarpa POPTR_0008s07150 N 0.798
PRUPE_ppa012284mg Prunus persica PRUPE_ppa012284mg N 0.798
Pm018957 Prunus mume Pm018957 N 0.798
cassava41267.m1 Manihot esculenta cassava41267.m1 N 0.798
Gorai.013G016900 Gossypium raimondii Gorai.013G016900 N 0.798
Lus10028986.g Linum usitatissimum Lus10028986.g N 0.798
SapurV1A.0061s0510 Salix purpurea SapurV1A.0061s0510 N 0.798
Ca_12464 Cicer arietinum Ca_12464 N 0.788
mgf019866m Mimulus guttatus mgf019866m N 0.788
MDP0000943252 Malus domestica MDP0000943252 N 0.788
MTR_3g071420 Medicago truncatula MTR_3g071420 N 0.778
cassava20837.m1 Manihot esculenta cassava20837.m1 N 0.778
Cucsa.136740 Cucumis sativus Cucsa.136740 N 0.778
MDP0000220708 Malus domestica MDP0000220708 N 0.778
LjSGA_139647.1 Lotus japonicus LjSGA_139647.1 N 0.769
29814.m000742 Ricinus communis 29814.m000742 N 0.768
PGSC0003DMG400027718 Solanum tuberosum PGSC0003DMG400027718 N 0.758
Solyc03g095940.1 Solanum lycopersicum Solyc03g095940.1 N 0.758