CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SMAC_08102 *(Sordaria macrospora)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	SMAC_08102	T223356_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Meis3 M00488_2.00	Mus musculus	NTGACANNN	NNNTGTCAN	PBM Berger et al.(2008) Mrg2_2302	0.709	0.455
Meis3 M03279_2.00	Mus musculus	NTGACAN	NTGTCAN	SELEX Jolma et al.(2013) Meis3_1	0.709	0.455
Meis3 M03280_2.00	Mus musculus	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) Meis3_2	0.709	0.455
hth M06490_2.00	Drosophila melanogaster	TGACAK	MTGTCA	B1H Mathelier et al.(2014) MA0227.1	0.677	0.473
hth M06252_2.00	Drosophila melanogaster	TGTCA	TGACA	B1H Zhu et al.(2011) Hth_Cell_FBgn0001235	0.677	0.473
hth M06253_2.00	Drosophila melanogaster	NNTGACAD	HTGTCANN	B1H Zhu et al.(2011) hth_SOLEXA_2_FBgn0001235	0.677	0.473
hth M06254_2.00	Drosophila melanogaster	NTGACA	TGTCAN	B1H Zhu et al.(2011) Hth_SOLEXA_FBgn0001235	0.677	0.473
Meis1 M00407_2.00	Mus musculus	NTGACADNN	NNHTGTCAN	PBM Berger et al.(2008) Meis1_2335	0.677	0.436
Meis2 M00437_2.00	Mus musculus	NTGACANNN	NNNTGTCAN	PBM Berger et al.(2008) Mrg1_2246	0.677	0.436
MEIS1 M03165_2.00	Homo sapiens	NTGACAN	NTGTCAN	SELEX Jolma et al.(2013) MEIS1_1	0.677	0.436
MEIS2 M03147_2.00	Homo sapiens	WTGACAGSTGTCAM	KTGACASCTGTCAW	SELEX Jolma et al.(2013) MEIS2_1	0.677	0.436
MEIS2 M03148_2.00	Homo sapiens	DTGACAGS	SCTGTCAH	SELEX Jolma et al.(2013) MEIS2_2	0.677	0.436
Meis2 M03261_2.00	Mus musculus	NTGACAN	NTGTCAN	SELEX Jolma et al.(2013) Meis2_1	0.677	0.436
Meis2 M03262_2.00	Mus musculus	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) Meis2_2	0.677	0.436
MEIS2 M02740_2.00	Homo sapiens	TGACASSTGTC	GACASSTGTCA	SELEX Jolma et al.(2010) MEIS2_dimer	0.677	0.436
MEIS2 M02741_2.00	Homo sapiens	GGACAKNT	ANMTGTCC	SELEX Jolma et al.(2010) MEIS2_monomer	0.677	0.436
MEIS2 M05138_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) MEIS2_eDBD_HT-SELEX	0.677	0.436
MEIS2 M05140_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) MEIS2_FL_HT-SELEX	0.677	0.436
MEIS1 M09148_2.00	Homo sapiens	NTGATTDATDDB	VHHATHAATCAN	Misc Kulakovskiy et al.(2013) MEIS1_HUMAN.H11MO.0.A	0.677	0.436
MEIS2 M09143_2.00	Homo sapiens	HTGACAGBTKTBM	KVAMAVCTGTCAD	Misc Kulakovskiy et al.(2013) MEIS2_HUMAN.H11MO.0.B	0.677	0.436
Meis1 M09178_2.00	Mus musculus	NTGATTDATDDB	VHHATHAATCAN	Misc Kulakovskiy et al.(2013) MEIS1_MOUSE.H11MO.0.A	0.677	0.436
Meis2 M09189_2.00	Mus musculus	HTGACAGBTKTBM	KVAMAVCTGTCAD	Misc Kulakovskiy et al.(2013) MEIS2_MOUSE.H11MO.0.B	0.677	0.436
Meis1 M09568_2.00	Mus musculus	VBTGWCASNN	NNSTGWCAVB	Misc Heinz et al.(2010) MastCells-Meis1_GSE48085	0.677	0.436
MEIS1 M10709_2.00	Homo sapiens	NHNTGACAGNDN	NHNCTGTCANDN	Transfac Matys et al.(2006) V$MEIS1_01	0.677	0.436
MEIS1 M10710_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$MEIS1_06	0.677	0.436
MEIS2 M05139_2.00	Homo sapiens	YGACASSYGHCR	YGDCRSSTGTCR	SELEX Yin et al.(2017) MEIS2_eDBD_Methyl-HT-SELEX	0.677	0.436
MEIS2 M05141_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) MEIS2_FL_Methyl-HT-SELEX	0.677	0.436
unc-62 M02185_2.00	Caenorhabditis elegans	NHDAHANNN	NNNTDTHDN	PBM Weirauch et al.(2014) pTH5781	0.661	0.455
Tgif2 M00521_2.00	Mus musculus	NNTGACANNN	NNNTGTCANN	PBM Berger et al.(2008) Tgif2_3451	0.651	0.509
TGIF2 M03123_2.00	Homo sapiens	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) TGIF2_1	0.651	0.509
TGIF2 M05032_2.00	Homo sapiens	TGACABVTGTCA	TGACABVTGTCA	SELEX Yin et al.(2017) TGIF2_eDBD_HT-SELEX	0.651	0.509
TGIF2 M05034_2.00	Homo sapiens	DTGACANN	NNTGTCAH	SELEX Yin et al.(2017) TGIF2_FL_HT-SELEX	0.651	0.509
TGIF2 M05033_2.00	Homo sapiens	TGWCABVTGWCA	TGWCABVTGWCA	SELEX Yin et al.(2017) TGIF2_eDBD_Methyl-HT-SELEX	0.651	0.509
TGIF2 M05035_2.00	Homo sapiens	DTGACANN	NNTGTCAH	SELEX Yin et al.(2017) TGIF2_FL_Methyl-HT-SELEX	0.651	0.509
achi M03860_2.00	Drosophila melanogaster	TGACAD	HTGTCA	SELEX Nitta et al.(2015) achi_1	0.647	0.455
achi M03861_2.00	Drosophila melanogaster	TGACAGMTGTCA	TGACAKCTGTCA	SELEX Nitta et al.(2015) achi_2	0.647	0.455
achi M03862_2.00	Drosophila melanogaster	TGACAGNNNNNNYGTCA	TGACRNNNNNNCTGTCA	SELEX Nitta et al.(2015) achi_3	0.647	0.455
vis M03859_2.00	Drosophila melanogaster	TGACAS	STGTCA	SELEX Nitta et al.(2015) vis_1	0.647	0.455
vis M06534_2.00	Drosophila melanogaster	TGACAB	BTGTCA	B1H Mathelier et al.(2014) MA0252.1	0.647	0.455
achi M06535_2.00	Drosophila melanogaster	TGACAG	CTGTCA	B1H Mathelier et al.(2014) MA0207.1	0.647	0.455
achi M06345_2.00	Drosophila melanogaster	TGTCADW	WHTGACA	B1H Zhu et al.(2011) Achi_Cell_FBgn0033749	0.647	0.455
achi M06346_2.00	Drosophila melanogaster	HTGACA	TGTCAD	B1H Zhu et al.(2011) Achi_SOLEXA_FBgn0033749	0.647	0.455
vis M06343_2.00	Drosophila melanogaster	TGTCA	TGACA	B1H Zhu et al.(2011) Vis_Cell_FBgn0033748	0.647	0.455
vis M06344_2.00	Drosophila melanogaster	TGTCAD	HTGACA	B1H Zhu et al.(2011) Vis_SOLEXA_FBgn0033748	0.647	0.455
Pknox1 M00399_2.00	Mus musculus	HGACRNNN	NNNYGTCD	PBM Berger et al.(2008) Pknox1_2364	0.647	0.491
Pknox2 M00468_2.00	Mus musculus	NNNGACRNNN	NNNYGTCNNN	PBM Berger et al.(2008) Pknox2_3077	0.647	0.491
PKNOX1 M03178_2.00	Homo sapiens	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) PKNOX1_1	0.647	0.491
PKNOX2 M03195_2.00	Homo sapiens	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) PKNOX2_1	0.647	0.491
Pknox2 M03270_2.00	Mus musculus	TGACAGSTGTCA	TGACASCTGTCA	SELEX Jolma et al.(2013) Pknox2_1	0.647	0.491
PKNOX1 M05206_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) PKNOX1_eDBD_HT-SELEX	0.647	0.491
PKNOX1 M05208_2.00	Homo sapiens	TGACAGCTGTCA	TGACAGCTGTCA	SELEX Yin et al.(2017) PKNOX1_FL_HT-SELEX	0.647	0.491
PKNOX2 M05246_2.00	Homo sapiens	TGACABVTGTCA	TGACABVTGTCA	SELEX Yin et al.(2017) PKNOX2_eDBD_HT-SELEX	0.647	0.491
PKNOX1 M09150_2.00	Homo sapiens	TGABTGRCRGV	BCYGYCAVTCA	Misc Kulakovskiy et al.(2013) PKNX1_HUMAN.H11MO.0.B	0.647	0.491
Pknox1 M09175_2.00	Mus musculus	TGABTGRCRGV	BCYGYCAVTCA	Misc Kulakovskiy et al.(2013) PKNX1_MOUSE.H11MO.0.A	0.647	0.491
PKNOX1 M10712_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$PREP1_Q3	0.647	0.491
PKNOX1 M05207_2.00	Homo sapiens	YGWCASSTGWCR	YGWCASSTGWCR	SELEX Yin et al.(2017) PKNOX1_eDBD_Methyl-HT-SELEX	0.647	0.491
PKNOX1 M05209_2.00	Homo sapiens	TGACABVTGTCA	TGACABVTGTCA	SELEX Yin et al.(2017) PKNOX1_FL_Methyl-HT-SELEX	0.647	0.491
PKNOX2 M05247_2.00	Homo sapiens	TGACASSTGTCA	TGACASSTGTCA	SELEX Yin et al.(2017) PKNOX2_eDBD_Methyl-HT-SELEX	0.647	0.491
Tgif1 M00500_2.00	Mus musculus	NNTGACANNN	NNNTGTCANN	PBM Berger et al.(2008) Tgif1_2342	0.616	0.455
TGIF1 M03223_2.00	Homo sapiens	TGACAGCTGTCA	TGACAGCTGTCA	SELEX Jolma et al.(2013) TGIF1_1	0.616	0.455
TGIF1 M05317_2.00	Homo sapiens	TGACAGSTGTCA	TGACASCTGTCA	SELEX Yin et al.(2017) TGIF1_eDBD_HT-SELEX	0.616	0.455
TGIF1 M09159_2.00	Homo sapiens	TGACAGS	SCTGTCA	Misc Kulakovskiy et al.(2013) TGIF1_HUMAN.H11MO.0.A	0.616	0.455
Tgif1 M09211_2.00	Mus musculus	TGACAGBNV	BNVCTGTCA	Misc Kulakovskiy et al.(2013) TGIF1_MOUSE.H11MO.0.A	0.616	0.455
TGIF1 M10740_2.00	Homo sapiens	WHNTGACARST	ASYTGTCANDW	Transfac Matys et al.(2006) V$TGIF_01	0.616	0.455
TGIF1 M05318_2.00	Homo sapiens	TGACAKVTGTCA	TGACABMTGTCA	SELEX Yin et al.(2017) TGIF1_eDBD_Methyl-HT-SELEX	0.616	0.455
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
CCC13981	Homeodomain	216	273	NKRRGNLPKEVTEKLYAWLYGHLNHPYPTEDEKQKMMRETNMQMNQISNWFINARRRK

Links
Other Homeodomain family TFs
Other *Sordaria macrospora* TFs

784 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
28609.m000209	Ricinus communis	28609.m000209	N	0.000
AC216731.3_FG001	Zea mays	AC216731.3_FG001	N	0.000
AMTR_s00024p00250370	Amborella trichopoda	AMTR_s00024p00250370	N	0.000
Aquca_041_00164	Aquilegia coerulea	Aquca_041_00164	N	0.000
BGIOSGA002533	Oryza indica	BGIOSGA002533	N	0.000
BGIOSGA008903	Oryza indica	BGIOSGA008903	N	0.000
BHLH83	Arabidopsis thaliana	AT1G66470	N	0.000
BHLH86	Arabidopsis thaliana	AT5G37800	N	0.000
Bo00835s050	Brassica oleracea	Bo00835s050	N	0.000
Bo6g101000	Brassica oleracea	Bo6g101000	N	0.000
Bostr.26959s0271	Boechera stricta	Bostr.26959s0271	N	0.000
Bostr.9638s0100	Boechera stricta	Bostr.9638s0100	N	0.000
Bra019708	Brassica rapa	Bra019708	N	0.000
BRADI1G42440	Brachypodium distachyon	BRADI1G42440	N	0.000
BRADI2G01000	Brachypodium distachyon	BRADI2G01000	N	0.000
BRADI3G53060	Brachypodium distachyon	BRADI3G53060	N	0.000
Cagra.2629s0001	Capsella grandiflora	Cagra.2629s0001	N	0.000
Cagra.8123s0001	Capsella grandiflora	Cagra.8123s0001	N	0.000
Carubv10007389m.g	Capsella rubella	Carubv10007389m.g	N	0.000
Carubv10021322m.g	Capsella rubella	Carubv10021322m.g	N	0.000
cassava10199.m1	Manihot esculenta	cassava10199.m1	N	0.000
Ca_16136	Cicer arietinum	Ca_16136	N	0.000
Ciclev10013420m.g	Citrus clementina	Ciclev10013420m.g	N	0.000
Cla020067	Citrullus lanatus	Cla020067	N	0.000
Cucsa.006340	Cucumis sativus	Cucsa.006340	N	0.000
estExt_fgenesh1_pg.C_1470079	Physcomitrella patens	estExt_fgenesh1_pg.C_1470079	N	0.000
estExt_fgenesh1_pg.C_840011	Physcomitrella patens	estExt_fgenesh1_pg.C_840011	N	0.000
Eucgr.F02831	Eucalyptus grandis	Eucgr.F02831	N	0.000
evm.TU.contig_27490	Carica papaya	evm.TU.contig_27490	N	0.000
F775_02947	Aegilops tauschii	F775_02947	N	0.000
F775_03185	Aegilops tauschii	F775_03185	N	0.000
F775_23458	Aegilops tauschii	F775_23458	N	0.000
F775_25020	Aegilops tauschii	F775_25020	N	0.000
F775_43492	Aegilops tauschii	F775_43492	N	0.000
gene17937-v1.0-hybrid	Fragaria vesca	gene17937-v1.0-hybrid	N	0.000
GLYMA02G41370	Glycine max	GLYMA02G41370	N	0.000
GLYMA11G33840	Glycine max	GLYMA11G33840	N	0.000
GLYMA14G07590	Glycine max	GLYMA14G07590	N	0.000
GLYMA18G04420	Glycine max	GLYMA18G04420	N	0.000
Gorai.001G086800	Gossypium raimondii	Gorai.001G086800	N	0.000
Gorai.004G064400	Gossypium raimondii	Gorai.004G064400	N	0.000
GRMZM2G066057	Zea mays	GRMZM2G066057	N	0.000
GSMUA_Achr10G20230_001	Musa acuminata	GSMUA_Achr10G20230_001	N	0.000
GSMUA_Achr2G22860_001	Musa acuminata	GSMUA_Achr2G22860_001	N	0.000
GSMUA_Achr3G01250_001	Musa acuminata	GSMUA_Achr3G01250_001	N	0.000
GSMUA_Achr6G09370_001	Musa acuminata	GSMUA_Achr6G09370_001	N	0.000
LPERR01G00690	Leersia perrieri	LPERR01G00690	N	0.000
LPERR02G24230	Leersia perrieri	LPERR02G24230	N	0.000
Lus10017634.g	Linum usitatissimum	Lus10017634.g	N	0.000
Lus10033592.g	Linum usitatissimum	Lus10033592.g	N	0.000
MDP0000435722	Malus domestica	MDP0000435722	N	0.000
mgf025678m	Mimulus guttatus	mgf025678m	N	0.000
MLOC_37511	Hordeum vulgare	MLOC_37511	N	0.000
MTR_5g079500	Medicago truncatula	MTR_5g079500	N	0.000
OB0081G10010	Oryza brachyantha	OB0081G10010	N	0.000
OB01G10850	Oryza brachyantha	OB01G10850	N	0.000
OB02G36990	Oryza brachyantha	OB02G36990	N	0.000
OBART01G00850	Oryza barthii	OBART01G00850	N	0.000
OBART02G29800	Oryza barthii	OBART02G29800	N	0.000
OGLUM01G00830	Oryza glumaepatula	OGLUM01G00830	N	0.000
OGLUM02G30450	Oryza glumaepatula	OGLUM02G30450	N	0.000
OLONG_010619	Oryza longistaminata	OLONG_010619	N	0.000
OMERI01G00290	Oryza meridionalis	OMERI01G00290	N	0.000
OMERI02G28660	Oryza meridionalis	OMERI02G28660	N	0.000
ONIVA01G00780	Oryza nivara	ONIVA01G00780	N	0.000
ONIVA02G32560	Oryza nivara	ONIVA02G32560	N	0.000
OPUNC01G00700	Oryza punctata	OPUNC01G00700	N	0.000
OPUNC02G27370	Oryza punctata	OPUNC02G27370	N	0.000
orange1.1g038918m.g	Citrus sinensis	orange1.1g038918m.g	N	0.000
ORGLA01G0007400	Oryza glaberrima	ORGLA01G0007400	N	0.000
ORGLA02G0253300	Oryza glaberrima	ORGLA02G0253300	N	0.000
ORUFI01G00830	Oryza rufipogon	ORUFI01G00830	N	0.000
ORUFI02G31420	Oryza rufipogon	ORUFI02G31420	N	0.000
OS01G0111500	Oryza sativa	OS01G0111500	N	0.000
OS02G0710300	Oryza sativa	OS02G0710300	N	0.000
Pavir.Aa00611	Panicum virgatum	Pavir.Aa00611	N	0.000
Pavir.Db01008	Panicum virgatum	Pavir.Db01008	N	0.000
Pavir.Eb00817	Panicum virgatum	Pavir.Eb00817	N	0.000
Pavir.J04215	Panicum virgatum	Pavir.J04215	N	0.000
Pavir.J20533	Panicum virgatum	Pavir.J20533	N	0.000
PGSC0003DMG400030650	Solanum tuberosum	PGSC0003DMG400030650	N	0.000
Pm014359	Prunus mume	Pm014359	N	0.000
POPTR_0004s08770	Populus trichocarpa	POPTR_0004s08770	N	0.000
POPTR_0005s14360	Populus trichocarpa	POPTR_0005s14360	N	0.000
PRUPE_ppa025775mg	Prunus persica	PRUPE_ppa025775mg	N	0.000
RHD6	Arabidopsis lyrata	scaffold_201372.1	N	0.000
RSL1	Arabidopsis lyrata	fgenesh2_kg.7__3192__AT5G37800.1	N	0.000
SapurV1A.0102s0280	Salix purpurea	SapurV1A.0102s0280	N	0.000
SapurV1A.0230s0340	Salix purpurea	SapurV1A.0230s0340	N	0.000
Sb03g008290	Sorghum bicolor	Sb03g008290	N	0.000
Sb04g030230	Sorghum bicolor	Sb04g030230	N	0.000
SELMODRAFT_409967	Selaginella moellendorffii	SELMODRAFT_409967	N	0.000
SELMODRAFT_413232	Selaginella moellendorffii	SELMODRAFT_413232	N	0.000
SELMODRAFT_414414	Selaginella moellendorffii	SELMODRAFT_414414	N	0.000
SELMODRAFT_418491	Selaginella moellendorffii	SELMODRAFT_418491	N	0.000
SELMODRAFT_423809	Selaginella moellendorffii	SELMODRAFT_423809	N	0.000
SELMODRAFT_426794	Selaginella moellendorffii	SELMODRAFT_426794	N	0.000
Si004720m.g	Setaria italica	Si004720m.g	N	0.000
Si019575m.g	Setaria italica	Si019575m.g	N	0.000
Solyc02g091440.1	Solanum lycopersicum	Solyc02g091440.1	N	0.000
TCM_019210	Theobroma cacao	TCM_019210	N	0.000
Thhalv10028239m.g	Eutrema salsugineum	Thhalv10028239m.g	N	0.000
TRAES3BF060500180CFD_g	Triticum aestivum	TRAES3BF060500180CFD_g	N	0.000
Traes_3AS_0D78930B4	Triticum aestivum	Traes_3AS_0D78930B4	N	0.000
Traes_6BL_9B25E6A10	Triticum aestivum	Traes_6BL_9B25E6A10	N	0.000
Traes_6BL_A964BE52B	Triticum aestivum	Traes_6BL_A964BE52B	N	0.000
Traes_6DL_3DCFAB31F	Triticum aestivum	Traes_6DL_3DCFAB31F	N	0.000
Traes_7BS_A0A8B25DF	Triticum aestivum	Traes_7BS_A0A8B25DF	N	0.000
Traes_7DS_4053B6E88	Triticum aestivum	Traes_7DS_4053B6E88	N	0.000
TRIUR3_11692	Triticum urartu	TRIUR3_11692	N	0.000
TRIUR3_14379	Triticum urartu	TRIUR3_14379	N	0.000
TRIUR3_27166	Triticum urartu	TRIUR3_27166	N	0.000
VIT_14s0006g01470	Vitis vinifera	VIT_14s0006g01470	N	0.000

SMAC_08102 (Sordaria macrospora) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

784 Related TFs

SMAC_08102 **(Sordaria macrospora)
Homeodomain**