Cmyd_10016952 (Chelonia mydas)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cmyd_10016952 T225774_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.704 0.386
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.704 0.386
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.704 0.386
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.704 0.386
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.704 0.386
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.704 0.386
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.704 0.386
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.704 0.386
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.704 0.386
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.701 0.500
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.701 0.500
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.701 0.500
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10016952 Homeodomain 102 145

Links

Other Homeodomain family TFs
Other Chelonia mydas TFs

1228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
e_gw1.4.390.1 Phytophthora capsici e_gw1.4.390.1 I 0.000
F443_04247 Phytophthora parasitica F443_04247 I 0.000
F443_20633 Phytophthora parasitica F443_20633 I 0.000
fgenesh1_kg.C_scaffold_1000461 Phytophthora capsici fgenesh1_kg.C_scaffold_1000461 I 0.000
fgenesh_scip_prom.28083.3668 Phytophthora lateralis fgenesh_scip_prom.28083.3668 I 0.000
fgenesh_scip_prom.46568.10732 Phytophthora kernoviae fgenesh_scip_prom.46568.10732 I 0.000
fgenesh_scip_prom.46568.5993 Phytophthora kernoviae fgenesh_scip_prom.46568.5993 I 0.000
HpaG801016 Hyaloperonospora arabidopsidis HpaG801016 I 0.000
HpaG811872 Hyaloperonospora arabidopsidis HpaG811872 I 0.000
maker-pag1_scaffold_4-fgenesh-gene-0.4 Pythium aphanidermatum maker-pag1_scaffold_4-fgenesh-gene-0.4 I 0.000
maker-par_contig_5774-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_5774-fgenesh-gene-0.0 I 0.000
maker-pir_contig_1153-fgenesh-gene-0.2 Pythium irregulare maker-pir_contig_1153-fgenesh-gene-0.2 I 0.000
maker-pir_contig_1401-snap-gene-0.1 Pythium irregulare maker-pir_contig_1401-snap-gene-0.1 I 0.000
maker-piw_contig_2979-fgenesh-gene-0.0 Pythium iwayamai maker-piw_contig_2979-fgenesh-gene-0.0 I 0.000
maker-pve_contig_695-fgenesh-gene-0.3 Pythium vexans maker-pve_contig_695-fgenesh-gene-0.3 I 0.000
Phyra72796 Phytophthora ramorum Phyra72796 D 0.000
Physo132994 Phytophthora sojae Physo132994 I 0.000
Physo142552 Phytophthora sojae Physo142552 I 0.000
PITG_00513 Phytophthora infestans PITG_00513 I 0.000
PITG_14364 Phytophthora infestans PITG_14364 I 0.000
PYU1_G004134 Pythium ultimum PYU1_G004134 I 0.000