29671.m000294 (Ricinus communis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 29671.m000294 T226970_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.636 0.684
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29671.m000294 Homeodomain 500 556

Links

Other Homeodomain family TFs
Other Ricinus communis TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g014710 Brassica oleracea Bo1g014710 I 0.671
Bo3g175850 Brassica oleracea Bo3g175850 I 0.638
Bostr.7867s0841 Boechera stricta Bostr.7867s0841 I 0.648
Bra010310 Brassica rapa Bra010310 I 0.638
Bra011153 Brassica rapa Bra011153 I 0.679
Cagra.0268s0009 Capsella grandiflora Cagra.0268s0009 I 0.638
Carubv10004175m.g Capsella rubella Carubv10004175m.g I 0.638
cassava27173.m1 Manihot esculenta cassava27173.m1 I 0.750
Ca_08838 Cicer arietinum Ca_08838 I 0.681
chr4.CM0244.10.nd Lotus japonicus chr4.CM0244.10.nd I 0.661
Cla019142 Citrullus lanatus Cla019142 N 0.602
Cucsa.081360 Cucumis sativus Cucsa.081360 N 0.602
Eucgr.C00114 Eucalyptus grandis Eucgr.C00114 I 0.678
gene17249-v1.0-hybrid Fragaria vesca gene17249-v1.0-hybrid I 0.717
GLYMA09G06730 Glycine max GLYMA09G06730 I 0.716
GLYMA13G00540 Glycine max GLYMA13G00540 I 0.741
GLYMA15G17956 Glycine max GLYMA15G17956 I 0.716
GLYMA17G06690 Glycine max GLYMA17G06690 I 0.741
Gorai.009G002500 Gossypium raimondii Gorai.009G002500 I 0.709
GSMUA_Achr8G23890_001 Musa acuminata GSMUA_Achr8G23890_001 N 0.695
LPERR02G03280 Leersia perrieri LPERR02G03280 N 0.619
Lus10015536.g Linum usitatissimum Lus10015536.g N 0.620
mgf003961m Mimulus guttatus mgf003961m I 0.651
MTR_2g038000 Medicago truncatula MTR_2g038000 D 0.636
PGSC0003DMG400028740 Solanum tuberosum PGSC0003DMG400028740 I 0.623
Pm008905 Prunus mume Pm008905 I 0.737
POPTR_0006s07520 Populus trichocarpa POPTR_0006s07520 N 0.739
POPTR_0018s13920 Populus trichocarpa POPTR_0018s13920 N 0.740
PRHA Arabidopsis lyrata scaffold_701235.1 I 0.605
PRUPE_ppa023964mg Prunus persica PRUPE_ppa023964mg I 0.737
SapurV1A.0140s0170 Salix purpurea SapurV1A.0140s0170 N 0.641
Solyc07g008730.1 Solanum lycopersicum Solyc07g008730.1 I 0.623
Thhalv10024489m.g Eutrema salsugineum Thhalv10024489m.g I 0.648