Pavir.Fb01724 (Panicum virgatum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Pavir.Fb01724 T229269_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.852 0.825
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.788 0.825
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.780 0.818
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.778 0.764
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.786 0.772
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.786 0.772
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.764 0.684
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.764 0.684
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.758 0.842
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.758 0.825
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.758 0.825
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Fb01724.1.p Homeodomain 166 222
Pavir.Fb01724.2.p Homeodomain 166 220

Links

Other Homeodomain family TFs
Other Panicum virgatum TFs

696 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCDUO_19178 Ancylostoma duodenale ANCDUO_19178 N 0.000
Brh_R000011 Buceros rhinoceros Brh_R000011 I 0.000
Brh_R008378 Buceros rhinoceros Brh_R008378 I 0.000
ENSECAG00000002506 Equus caballus ENSECAG00000002506 I 0.000
Gfo_R000008 Geospiza fortis Gfo_R000008 N 0.000
ISCW012461 Ixodes scapularis ISCW012461 N 0.000
M407DRAFT_77617 Tulasnella calospora M407DRAFT_77617 N 0.000
Minc16530 Meloidogyne incognita Minc16530 N 0.000
ORUFI09G21220 Oryza rufipogon ORUFI09G21220 N 0.000
RAX2 Microcebus murinus ENSMICG00000014768 I 0.000
SCUD_0000383301 Schistosoma curassoni SCUD_0000383301 N 0.000
snap_masked-nMf.1.1.scaf13062-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf13062-processed-gene-0.2 N 0.000