nAv.1.0.1.g03932 (Acanthocheilonema viteae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 nAv.1.0.1.g03932 T235190_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rhox8
M02103_2.00 		Rattus norvegicus
NGGTGTWAH
DTWACACCN		 PBM
Weirauch et al.(2014)
pTH6071 		0.654 0.611
CBG01820
M01241_2.00 		Caenorhabditis briggsae
NTAATCCN
NGGATTAN		 PBM
Lambert et al.(2019)
pTH11454 		0.638 0.870
Ptx1
M02123_2.00 		Drosophila melanogaster
NTAATCYNN
NNRGATTAN		 PBM
Weirauch et al.(2014)
pTH5644 		0.630 0.778
Ptx1
M00562_2.00 		Drosophila melanogaster
NYTAATCCBN
NVGGATTARN		 PBM
Busser et al.(2012a)
Ptx1 		0.630 0.778
Ptx1
M03842_2.00 		Drosophila melanogaster
NTAATCCN
NGGATTAN		 SELEX
Nitta et al.(2015)
Ptx1_1 		0.630 0.778
Ptx1
M03843_2.00 		Drosophila melanogaster
NTAATCCN
NGGATTAN		 SELEX
Nitta et al.(2015)
Ptx1_2 		0.630 0.778
Ptx1
M03844_2.00 		Drosophila melanogaster
NCGHTAATCCN
NGGATTADCGN		 SELEX
Nitta et al.(2015)
Ptx1_3 		0.630 0.778
Ptx1
M06521_2.00 		Drosophila melanogaster
YTAATCC
GGATTAR		 B1H
Mathelier et al.(2014)
MA0201.1 		0.630 0.778
Ptx1
M06319_2.00 		Drosophila melanogaster
YTAATCC
GGATTAR		 B1H
Zhu et al.(2011)
Ptx1_Cell_FBgn0020912 		0.630 0.778
Ptx1
M06320_2.00 		Drosophila melanogaster
NYTAATCC
GGATTARN		 B1H
Zhu et al.(2011)
Ptx1_SOLEXA_FBgn0020912 		0.630 0.778
PITX2
M00313_2.00 		Homo sapiens
NWAAKHYN
NRDMTTWN		 PBM
Barrera et al.(2016)
PITX2_REF 		0.629 0.759
Pitx1
M00415_2.00 		Mus musculus
NTAATCYNN
NNRGATTAN		 PBM
Berger et al.(2008)
Pitx1_2312 		0.629 0.759
Pitx3
M00428_2.00 		Mus musculus
NTAAKCYN
NRGMTTAN		 PBM
Berger et al.(2008)
Pitx3_3497 		0.629 0.759
Pitx2
M00440_2.00 		Mus musculus
NTAATCCN
NGGATTAN		 PBM
Berger et al.(2008)
Pitx2_2274 		0.629 0.759
PITX1
M03082_2.00 		Homo sapiens
NHTAATCCN
NGGATTADN		 SELEX
Jolma et al.(2013)
PITX1_1 		0.629 0.759
PITX1
M03083_2.00 		Homo sapiens
NHTAATCCN
NGGATTADN		 SELEX
Jolma et al.(2013)
PITX1_2 		0.629 0.759
PITX1
M03084_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Jolma et al.(2013)
PITX1_3 		0.629 0.759
PITX3
M03111_2.00 		Homo sapiens
NHTAATCCN
NGGATTADN		 SELEX
Jolma et al.(2013)
PITX3_1 		0.629 0.759
PITX1
M04928_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
PITX1_eDBD_HT-SELEX 		0.629 0.759
PITX1
M04930_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
PITX1_FL_HT-SELEX 		0.629 0.759
PITX2
M05229_2.00 		Homo sapiens
NTAAKCCN
NGGMTTAN		 SELEX
Yin et al.(2017)
PITX2_eDBD_HT-SELEX 		0.629 0.759
PITX2
M05231_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
PITX2_FL_HT-SELEX 		0.629 0.759
PITX3
M04997_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
PITX3_eDBD_HT-SELEX 		0.629 0.759
Pitx1
M09182_2.00 		Mus musculus
NYWAAKCCYH
DRGGMTTWRN		 Misc
Kulakovskiy et al.(2013)
PITX1_MOUSE.H11MO.0.C 		0.629 0.759
PITX1
M10640_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX1_Q4 		0.629 0.759
PITX1
M10641_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX1_Q6 		0.629 0.759
PITX2
M10720_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX2_Q2 		0.629 0.759
PITX2
M10721_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX2_Q4 		0.629 0.759
PITX2
M10722_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX2_Q6 		0.629 0.759
PITX3
M10660_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX3_Q2 		0.629 0.759
PITX3
M10661_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX3_Q3_01 		0.629 0.759
PITX3
M10662_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PITX3_Q3 		0.629 0.759
PITX2
M00314_2.00 		Homo sapiens
NTAATMYN
NRKATTAN		 PBM
Barrera et al.(2016)
PITX2_T114P 		0.629 0.759
PITX1
M04929_2.00 		Homo sapiens
NTAAKCCN
NGGMTTAN		 SELEX
Yin et al.(2017)
PITX1_eDBD_Methyl-HT-SELEX 		0.629 0.759
PITX1
M04931_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
PITX1_FL_Methyl-HT-SELEX 		0.629 0.759
PITX2
M05230_2.00 		Homo sapiens
HTAATCCN
NGGATTAD		 SELEX
Yin et al.(2017)
PITX2_eDBD_Methyl-HT-SELEX 		0.629 0.759
PITX2
M05232_2.00 		Homo sapiens
YTAATCCY
RGGATTAR		 SELEX
Yin et al.(2017)
PITX2_FL_Methyl-HT-SELEX 		0.629 0.759
PITX3
M04998_2.00 		Homo sapiens
NTAATCCN
NGGATTAN		 SELEX
Yin et al.(2017)
PITX3_eDBD_Methyl-HT-SELEX 		0.629 0.759
PITX2
M00310_2.00 		Homo sapiens
HTAATCYN
NRGATTAD		 PBM
Barrera et al.(2016)
PITX2_L100Q 		0.629 0.741
PITX2
M00311_2.00 		Homo sapiens
TTAATCCY
RGGATTAA		 PBM
Barrera et al.(2016)
PITX2_R108H 		0.624 0.741
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nAv.1.0.1.t03932-RA Homeodomain 180 237

Links

Other Homeodomain family TFs
Other Acanthocheilonema viteae TFs

283 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANAC050 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000864 I 0.000
ANAC050 Arabidopsis thaliana AT3G10480 D 0.000
ANAC052 Arabidopsis thaliana AT3G10490 I 0.000
ANAC052 Arabidopsis lyrata fgenesh2_kg.3__1083__AT3G10490.2 I 0.000
BGIOSGA009316 Oryza indica BGIOSGA009316 I 0.000
BGIOSGA026481 Oryza indica BGIOSGA026481 I 0.000
Bo1g143840 Brassica oleracea Bo1g143840 I 0.000
Bo1g143850 Brassica oleracea Bo1g143850 I 0.000
Bostr.22252s0011 Boechera stricta Bostr.22252s0011 I 0.000
Bostr.22252s0012 Boechera stricta Bostr.22252s0012 I 0.000
Bra034118 Brassica rapa Bra034118 I 0.000
Bra034119 Brassica rapa Bra034119 I 0.000
BRADI3G12470 Brachypodium distachyon BRADI3G12470 I 0.000
BRADI3G56080 Brachypodium distachyon BRADI3G56080 I 0.000
Cagra.0834s0028 Capsella grandiflora Cagra.0834s0028 I 0.000
Cagra.0834s0029 Capsella grandiflora Cagra.0834s0029 I 0.000
Carubv10013564m.g Capsella rubella Carubv10013564m.g I 0.000
Carubv10013694m.g Capsella rubella Carubv10013694m.g I 0.000
cassava22912.valid.m1 Manihot esculenta cassava22912.valid.m1 I 0.000
Ca_08371 Cicer arietinum Ca_08371 I 0.000
chr5.CM0909.750.nc Lotus japonicus chr5.CM0909.750.nc I 0.000
Ciclev10031606m.g Citrus clementina Ciclev10031606m.g I 0.000
F775_27564 Aegilops tauschii F775_27564 I 0.000
GLYMA10G34130 Glycine max GLYMA10G34130 I 0.000
GLYMA20G33430 Glycine max GLYMA20G33430 I 0.000
Gorai.009G309300 Gossypium raimondii Gorai.009G309300 I 0.000
Gorai.011G234200 Gossypium raimondii Gorai.011G234200 I 0.000
Gorai.012G007000 Gossypium raimondii Gorai.012G007000 I 0.000
GRMZM2G113950 Zea mays GRMZM2G113950 I 0.000
GRMZM2G125777 Zea mays GRMZM2G125777 I 0.000
LPERR02G31180 Leersia perrieri LPERR02G31180 N 0.000
LPERR08G20450 Leersia perrieri LPERR08G20450 I 0.000
Lus10037939.g Linum usitatissimum Lus10037939.g I 0.000
Lus10038670.g Linum usitatissimum Lus10038670.g I 0.000
mgf000623m Mimulus guttatus mgf000623m I 0.000
MTR_1g090720 Medicago truncatula MTR_1g090720 I 0.000
OB02G44540 Oryza brachyantha OB02G44540 I 0.000
OB08G30590 Oryza brachyantha OB08G30590 I 0.000
OBART02G37700 Oryza barthii OBART02G37700 I 0.000
OGLUM02G38880 Oryza glumaepatula OGLUM02G38880 I 0.000
OGLUM08G25240 Oryza glumaepatula OGLUM08G25240 I 0.000
OLONG_023179 Oryza longistaminata OLONG_023179 I 0.000
OMERI08G18580 Oryza meridionalis OMERI08G18580 I 0.000
ONIVA02G40500 Oryza nivara ONIVA02G40500 I 0.000
ONIVA08G26810 Oryza nivara ONIVA08G26810 I 0.000
OPUNC02G34910 Oryza punctata OPUNC02G34910 I 0.000
OPUNC08G21700 Oryza punctata OPUNC08G21700 I 0.000
orange1.1g014130m.g Citrus sinensis orange1.1g014130m.g I 0.000
ORGLA02G0329400 Oryza glaberrima ORGLA02G0329400 I 0.000
ORGLA08G0191600 Oryza glaberrima ORGLA08G0191600 I 0.000
ORUFI02G39260 Oryza rufipogon ORUFI02G39260 I 0.000
ORUFI08G26250 Oryza rufipogon ORUFI08G26250 I 0.000
OS02G0822400 Oryza sativa OS02G0822400 I 0.000
OS08G0562200 Oryza sativa OS08G0562200 I 0.000
Pavir.Aa00085 Panicum virgatum Pavir.Aa00085 I 0.000
Pavir.Ab03009 Panicum virgatum Pavir.Ab03009 I 0.000
Pavir.Fa00048 Panicum virgatum Pavir.Fa00048 I 0.000
Pavir.Fb02407 Panicum virgatum Pavir.Fb02407 I 0.000
POPTR_0010s23630 Populus trichocarpa POPTR_0010s23630 I 0.000
SapurV1A.0213s0310 Salix purpurea SapurV1A.0213s0310 I 0.000
Sb04g037720 Sorghum bicolor Sb04g037720 I 0.000
Sb07g023900 Sorghum bicolor Sb07g023900 I 0.000
Si013361m.g Setaria italica Si013361m.g I 0.000
Si016620m.g Setaria italica Si016620m.g I 0.000
Solyc05g055470.2 Solanum lycopersicum Solyc05g055470.2 I 0.000
TCM_043357 Theobroma cacao TCM_043357 I 0.000
Thhalv10020717m.g Eutrema salsugineum Thhalv10020717m.g I 0.000
Thhalv10020745m.g Eutrema salsugineum Thhalv10020745m.g I 0.000
Traes_6AL_8BA1FF8B2 Triticum aestivum Traes_6AL_8BA1FF8B2 I 0.000
Traes_7BL_FB5FAC1E8 Triticum aestivum Traes_7BL_FB5FAC1E8 I 0.000
Traes_7DS_9FBF54244 Triticum aestivum Traes_7DS_9FBF54244 I 0.000
TRIUR3_33524 Triticum urartu TRIUR3_33524 I 0.000
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I 0.000