CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GRMZM2G002131 *(Zea mays)* HSF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00447 (HSF_DNA-bind)	IPR000232	GRMZM2G002131	T240739_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HSFB2B M06945_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_col_a	0.442	0.713
HSFB2B M06946_2.00	Arabidopsis thaliana	RGAANNTTCTAGAA	TTCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSF7_colamp_a	0.442	0.713
HSFB4 M06936_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFB4_col_a	0.436	0.690
HSFB3 M06937_2.00	Arabidopsis thaliana	RRAANMWTCTAGAAV	BTTCTAGAWKNTTYY	Dap-seq OMalley et al.(2016) HSFB3_col_a	0.429	0.701
HSFB3 M06938_2.00	Arabidopsis thaliana	AABSTTCTAGAAN	NTTCTAGAASVTT	Dap-seq OMalley et al.(2016) HSFB3_colamp_a	0.429	0.701
HSFB2A M00869_2.00	Arabidopsis thaliana	NNNNNTTCB	VGAANNNNN	PBM Franco-Zorrilla et al.(2014) HSFB2A	0.416	0.690
HSFB2A M06952_2.00	Arabidopsis thaliana	GAANNTTCYAGA	TCTRGAANNTTC	Dap-seq OMalley et al.(2016) HSF6_col_a	0.416	0.690
HSFC1 M00868_2.00	Arabidopsis thaliana	NDTCBNNN	NNNVGAHN	PBM Franco-Zorrilla et al.(2014) HSFC1	0.400	0.598
HSFC1 M06943_2.00	Arabidopsis thaliana	GAASNTTCTAG	CTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFC1_col_a	0.400	0.598
HSFC1 M06944_2.00	Arabidopsis thaliana	RGAASNTTCTAGAANVW	WBNTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFC1_colamp_a	0.400	0.598
HSFA4A M06947_2.00	Arabidopsis thaliana	NNNRGAABBTTCTAGAANN	NNTTCTAGAAVVTTCYNNN	Dap-seq OMalley et al.(2016) HSF21_col_a	0.393	0.586
HSFA1E M06939_2.00	Arabidopsis thaliana	RGAANNTTCTAGA	TCTAGAANNTTCY	Dap-seq OMalley et al.(2016) HSFA1E_col_a	0.381	0.644
HSFA1E M06940_2.00	Arabidopsis thaliana	RGAASNTTCTAGAAN	NTTCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA1E_colamp_a	0.381	0.644
HSFA1B M06948_2.00	Arabidopsis thaliana	GAANNTTCTAGA	TCTAGAANNTTC	Dap-seq OMalley et al.(2016) HSF3_col_a	0.361	0.655
HSFA1B M06949_2.00	Arabidopsis thaliana	TTCYRG	CYRGAA	Dap-seq OMalley et al.(2016) HSF3_colamp_a	0.361	0.655
HSFA6B M06941_2.00	Arabidopsis thaliana	RGAASNTTCTAGA	TCTAGAANSTTCY	Dap-seq OMalley et al.(2016) HSFA6B_colamp_a	0.360	0.632
HSFA6B M06942_2.00	Arabidopsis thaliana	RGAABNTTCTRGAAN	NTTCYAGAANVTTCY	Dap-seq OMalley et al.(2016) HSFA6B_col	0.360	0.632
HSFA6A M06950_2.00	Arabidopsis thaliana	GAASNTTCTAGAANNW	WNNTTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_col_a	0.357	0.563
HSFA6A M06951_2.00	Arabidopsis thaliana	GAASNTTCTAGAA	TTCTAGAANSTTC	Dap-seq OMalley et al.(2016) HSFA6A_colamp_a	0.357	0.563
For this family, TFs with SR scores > 0.318* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
GRMZM2G002131_P01	HSF	18	108	FLSKTHQMVEERGTDEVISWAEQGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANENFRRGEQGLLSGIRRRK

Links
Other HSF family TFs
Other *Zea mays* TFs

1388 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AtMYB47	Arabidopsis thaliana	AT1G18710	N
AtMYB47	Arabidopsis lyrata	fgenesh1_pg.C_scaffold_1001691	N
Bo5g025730	Brassica oleracea	Bo5g025730	N
Bo6g087030	Brassica oleracea	Bo6g087030	N
Bo6g118710	Brassica oleracea	Bo6g118710	N
Bo6g118730	Brassica oleracea	Bo6g118730	N
Bo8g068030	Brassica oleracea	Bo8g068030	N
Bo8g091080	Brassica oleracea	Bo8g091080	N
Bostr.7128s0480	Boechera stricta	Bostr.7128s0480	N
Bostr.7128s0481	Boechera stricta	Bostr.7128s0481	N
Bra003801	Brassica rapa	Bra003801	N
Bra015911	Brassica rapa	Bra015911	N
Bra015912	Brassica rapa	Bra015912	N
Bra025678	Brassica rapa	Bra025678	N
Cagra.4153s0008	Capsella grandiflora	Cagra.4153s0008	N
Carubv10010045m.g	Capsella rubella	Carubv10010045m.g	N
Carubv10010086m.g	Capsella rubella	Carubv10010086m.g	N
Carubv10011014m.g	Capsella rubella	Carubv10011014m.g	N
fgenesh1_pg.C_scaffold_1001692	Arabidopsis lyrata	fgenesh1_pg.C_scaffold_1001692	N
Thhalv10018987m.g	Eutrema salsugineum	Thhalv10018987m.g	N

GRMZM2G002131 (Zea mays) HSF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1388 Related TFs

GRMZM2G002131 **(Zea mays)
HSF**