ENSLACG00000018600 (Latimeria chalumnae)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00605 (IRF) IPR001346 ENSLACG00000018600 T244137_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.952 0.952
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.943 0.943
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.943 0.943
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.905 0.905
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.905 0.905
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.905 0.905
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.905 0.905
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.905 0.905
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.771 0.771
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.714 0.714
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.714 0.714
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.714 0.714
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.714 0.714
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.714 0.714
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.714 0.714
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.714 0.714
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.714 0.714
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000021171 IRF 9 114

Links

Other IRF family TFs
Other Latimeria chalumnae TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003197 Calypte anna Aan_R003197 I
Afo_R015956 Aptenodytes forsteri Afo_R015956 I
Cmyd_10011837 Chelonia mydas Cmyd_10011837 I
ENSAPLG00000016315 Anas platyrhynchos ENSAPLG00000016315 I
ENSCPOG00000002470 Cavia porcellus ENSCPOG00000002470 I
ENSCSAG00000017176 Chlorocebus sabaeus ENSCSAG00000017176 I
ENSDORG00000015727 Dipodomys ordii ENSDORG00000015727 I
ENSFALG00000003827 Ficedula albicollis ENSFALG00000003827 I
ENSLACG00000011834 Latimeria chalumnae ENSLACG00000011834 I
ENSMEUG00000000949 Macropus eugenii ENSMEUG00000000949 I
ENSMMUP00000012928 Macaca fascicularis ENSMMUP00000012928 I
ENSMPUG00000012117 Mustela putorius furo ENSMPUG00000012117 I
ENSNLEG00000014404 Nomascus leucogenys ENSNLEG00000014404 I
ENSOANG00000022558 Ornithorhynchus anatinus ENSOANG00000022558 I
ENSOARG00000013285 Ovis aries ENSOARG00000013285 I
ENSP00000338283-D1 Bos grunniens ENSP00000338283-D1 I
ENSPANG00000000546 Papio anubis ENSPANG00000000546 I
ENSPPYG00000012101 Pongo abelii ENSPPYG00000012101 I
ENSSHAG00000010526 Sarcophilus harrisii ENSSHAG00000010526 I
ENSSTOG00000008934 Ictidomys tridecemlineatus ENSSTOG00000008934 I
ENSTSYG00000005382 Tarsius syrichta ENSTSYG00000005382 I
Gfo_R005610 Geospiza fortis Gfo_R005610 I
NPAS2 Tursiops truncatus ENSTTRG00000016446 I
NPAS2 Taeniopygia guttata ENSTGUG00000010003 I
NPAS2 Tupaia belangeri ENSTBEG00000012008 I
NPAS2 Vicugna pacos ENSVPAG00000001242 I
NPAS2 Sus scrofa ENSSSCG00000008171 I
NPAS2 Callithrix jacchus ENSCJAG00000021202 I
NPAS2 Choloepus hoffmanni ENSCHOG00000008122 I
NPAS2 Canis familiaris ENSCAFG00000002223 I
Npas2 Rattus norvegicus ENSRNOG00000013408 I
NPAS2 Bos taurus ENSBTAG00000019697 I
NPAS2 Pan troglodytes ENSPTRG00000012287 I
NPAS2 Homo sapiens ENSG00000170485 D
NPAS2 Otolemur garnettii ENSOGAG00000014490 I
NPAS2 Felis catus ENSFCAG00000005306 I
NPAS2 Gallus gallus ENSGALG00000016774 I
NPAS2 Gorilla gorilla ENSGGOG00000006420 I
NPAS2 Echinops telfairi ENSETEG00000008221 I
NPAS2 Loxodonta africana ENSLAFG00000016336 I
NPAS2 Equus caballus ENSECAG00000000171 I
NPAS2 Meleagris gallopavo ENSMGAG00000014799 I
NPAS2 Microcebus murinus ENSMICG00000016027 I
NPAS2 Macaca mulatta ENSMMUG00000009871 I
NPAS2 Monodelphis domestica ENSMODG00000001691 I
NPAS2 Dasypus novemcinctus ENSDNOG00000002520 I
Npas2 Mus musculus ENSMUSG00000026077 D
NPAS2 Anolis carolinensis ENSACAG00000007946 I
NPAS2 Oryctolagus cuniculus ENSOCUG00000002384 I
NPAS2 Procavia capensis ENSPCAG00000004689 I
Ogr16001 Ophisaurus gracilis Ogr16001 I
Pvit_02251 Pogona vitticeps Pvit_02251 I
Tal_R012319 Tyto alba Tal_R012319 I