CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Irf3
(
Rattus norvegicus
)
IRF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00605 (IRF)
IPR001346
ENSRNOG00000043388
T244371_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Irf3
M00174_2.00
Mus musculus
RDWNBGMAAS
STTKCVNWHY
PBM
Badis et al.(2009)
Irf3_3985
0.933
0.933
Irf3
M09241_2.00
Mus musculus
RRRARDGAAAVDGRAASNRA
TYNSTTYCHBTTTCHYTYYY
Misc
Kulakovskiy et al.(2013)
IRF3_MOUSE.H11MO.0.A
0.933
0.933
IRF3
M03331_2.00
Homo sapiens
NNRRAANGGAAACCGAAACYR
YRGTTTCGGTTTCCNTTYYNN
SELEX
Jolma et al.(2013)
IRF3_1
0.856
0.856
IRF3
M05531_2.00
Homo sapiens
DCVGTTTCSNSGAAACCGMAASN
NSTTKCGGTTTCSNSGAAACBGH
SELEX
Yin et al.(2017)
IRF3_eDBD_HT-SELEX
0.856
0.856
IRF3
M05533_2.00
Homo sapiens
HSGAAAVBGAAACYGAAACN
NGTTTCRGTTTCVBTTTCSD
SELEX
Yin et al.(2017)
IRF3_FL_HT-SELEX
0.856
0.856
IRF3
M09234_2.00
Homo sapiens
RRRARDGAAAVDGRAASNRA
TYNSTTYCHBTTTCHYTYYY
Misc
Kulakovskiy et al.(2013)
IRF3_HUMAN.H11MO.0.B
0.856
0.856
IRF3
M10883_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$IRF3_Q3
0.856
0.856
IRF3
M05532_2.00
Homo sapiens
KCDSTTTCCHGGAAAMNRAWAV
BTWTYNKTTTCCDGGAAASHGM
SELEX
Yin et al.(2017)
IRF3_eDBD_Methyl-HT-SELEX
0.856
0.856
IRF3
M05534_2.00
Homo sapiens
HGGAAABBGAAASBGAAASN
NSTTTCVSTTTCVVTTTCCD
SELEX
Yin et al.(2017)
IRF3_FL_Methyl-HT-SELEX
0.856
0.856
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000027786
IRF
7
110
LILPWLVSQLDLGQLKGVAWLDESRTKFRIPWKHGLRQDAQMADFGIFQAWAEASGAYTPGKDKPDLSTWKRNFRSALNRKEVLRLAEDRSKDPFDPHKVYEFV
Links
Other
IRF
family TFs
Other
Rattus norvegicus
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
30148.m001468
Ricinus communis
30148.m001468
N
AMTR_s00011p00266100
Amborella trichopoda
AMTR_s00011p00266100
N
Aquca_052_00048
Aquilegia coerulea
Aquca_052_00048
N
BGIOSGA028041
Oryza indica
BGIOSGA028041
N
Bo2g097550
Brassica oleracea
Bo2g097550
N
Bostr.10180s0008
Boechera stricta
Bostr.10180s0008
N
Bra008513
Brassica rapa
Bra008513
N
BRADI3G16040
Brachypodium distachyon
BRADI3G16040
N
Cagra.2194s0001
Capsella grandiflora
Cagra.2194s0001
N
Carubv10020145m.g
Capsella rubella
Carubv10020145m.g
N
cassava13701.valid.m1
Manihot esculenta
cassava13701.valid.m1
N
cassava13702.valid.m1
Manihot esculenta
cassava13702.valid.m1
N
cassava41980.valid.m1
Manihot esculenta
cassava41980.valid.m1
N
Ca_22622
Cicer arietinum
Ca_22622
N
Ca_22625
Cicer arietinum
Ca_22625
N
chr3.CM0127.660.nc
Lotus japonicus
chr3.CM0127.660.nc
N
Ciclev10031289m.g
Citrus clementina
Ciclev10031289m.g
N
Cla006897
Citrullus lanatus
Cla006897
N
Cucsa.073340
Cucumis sativus
Cucsa.073340
N
Eucgr.A02994
Eucalyptus grandis
Eucgr.A02994
N
evm.TU.supercontig_3807.1
Carica papaya
evm.TU.supercontig_3807.1
N
F775_32229
Aegilops tauschii
F775_32229
N
gene12547-v1.0-hybrid
Fragaria vesca
gene12547-v1.0-hybrid
N
GLYMA09G35750
Glycine max
GLYMA09G35750
N
GLYMA12G01600
Glycine max
GLYMA12G01600
N
Gorai.004G255000
Gossypium raimondii
Gorai.004G255000
N
Gorai.007G247500
Gossypium raimondii
Gorai.007G247500
N
GRMZM2G006736
Zea mays
GRMZM2G006736
N
GRMZM2G543629
Zea mays
GRMZM2G543629
N
GSMUA_Achr11G08010_001
Musa acuminata
GSMUA_Achr11G08010_001
N
GSMUA_Achr1G10700_001
Musa acuminata
GSMUA_Achr1G10700_001
N
LPERR08G03850
Leersia perrieri
LPERR08G03850
N
Lus10020365.g
Linum usitatissimum
Lus10020365.g
N
MDP0000934360
Malus domestica
MDP0000934360
N
MDP0000939377
Malus domestica
MDP0000939377
N
mgf004750m
Mimulus guttatus
mgf004750m
N
mgf015154m
Mimulus guttatus
mgf015154m
N
mgf016433m
Mimulus guttatus
mgf016433m
N
MTR_0172s0030
Medicago truncatula
MTR_0172s0030
N
OB08G14150
Oryza brachyantha
OB08G14150
N
OBART08G03910
Oryza barthii
OBART08G03910
N
OGLUM08G04010
Oryza glumaepatula
OGLUM08G04010
N
OLONG_000145
Oryza longistaminata
OLONG_000145
N
OMERI08G04040
Oryza meridionalis
OMERI08G04040
N
ONIVA08G03880
Oryza nivara
ONIVA08G03880
N
OPUNC08G03810
Oryza punctata
OPUNC08G03810
N
orange1.1g010521m.g
Citrus sinensis
orange1.1g010521m.g
N
ORGLA08G0033200
Oryza glaberrima
ORGLA08G0033200
N
ORUFI08G04310
Oryza rufipogon
ORUFI08G04310
N
OS08G0163400
Oryza sativa
OS08G0163400
N
Pavir.Fb00544
Panicum virgatum
Pavir.Fb00544
N
Pavir.J39657
Panicum virgatum
Pavir.J39657
N
PDK_20s1319221g002
Phoenix dactylifera
PDK_20s1319221g002
N
PGSC0003DMG400026491
Solanum tuberosum
PGSC0003DMG400026491
N
PGSC0003DMG400027038
Solanum tuberosum
PGSC0003DMG400027038
N
PK03826.1
Cannabis sativa
PK03826.1
N
Pm019567
Prunus mume
Pm019567
N
POPTR_0013s07290
Populus trichocarpa
POPTR_0013s07290
N
POPTR_0019s06020
Populus trichocarpa
POPTR_0019s06020
N
PRUPE_ppa004393mg
Prunus persica
PRUPE_ppa004393mg
N
SapurV1A.0592s0030
Salix purpurea
SapurV1A.0592s0030
N
SapurV1A.1326s0010
Salix purpurea
SapurV1A.1326s0010
N
SapurV1A.1456s0040
Salix purpurea
SapurV1A.1456s0040
N
Sb07g004340
Sorghum bicolor
Sb07g004340
N
Si013608m.g
Setaria italica
Si013608m.g
N
SIGA
Arabidopsis thaliana
AT1G64860
N
SIGA
Vitis vinifera
VIT_16s0039g00660
N
SIGA
Arabidopsis lyrata
scaffold_200883.1
N
Solyc03g097320.2
Solanum lycopersicum
Solyc03g097320.2
N
Solyc06g072710.2
Solanum lycopersicum
Solyc06g072710.2
N
TCM_025640
Theobroma cacao
TCM_025640
N
Thhalv10002486m.g
Eutrema salsugineum
Thhalv10002486m.g
N
Traes_7AL_33A778289
Triticum aestivum
Traes_7AL_33A778289
N
Traes_7BL_0D553E505
Triticum aestivum
Traes_7BL_0D553E505
N
Traes_7DL_21A260D0C
Triticum aestivum
Traes_7DL_21A260D0C
N
TRIUR3_34525
Triticum urartu
TRIUR3_34525
N