irf6.2 (Xenopus tropicalis)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 XB-GENE-5910331 T244622_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
irf6.2
M02259_2.00		 Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.971 0.971
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.962 0.962
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.914 0.914
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.914 0.914
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.914 0.914
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.914 0.914
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.914 0.914
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.752 0.752
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.705 0.705
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.705 0.705
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.705 0.705
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.705 0.705
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.705 0.705
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.705 0.705
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.705 0.705
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02259_2.00 IRF 9 114

DNA Binding Domains

Protein ID Domain From To Sequence
CAJ81559 IRF 9 114

Links

Other IRF family TFs
Other Xenopus tropicalis TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AFUA_7G04170 Aspergillus fumigatus CADAFUAG00009404 N
ANIA_05691 Aspergillus nidulans CADANIAG00003374 I
CADAFLAG00000127 Aspergillus flavus CADAFLAG00000127 N
CADANGAG00010600 Aspergillus niger CADANGAG00010600 N
CSUB01_07726 Colletotrichum sublineola CSUB01_07726 N
EURHEDRAFT_460772 Aspergillus ruber EURHEDRAFT_460772 N
FGRRES_16927 Fusarium graminearum FGRRES_16927 N
FPSE_04457 Fusarium pseudograminearum FPSE_04457 N
GNLVRS01_PISO0I00844g Millerozyma farinosa GNLVRS01_PISO0I00844g N
GNLVRS01_PISO0I18070g Millerozyma farinosa GNLVRS01_PISO0I18070g N
GNLVRS01_PISO0J19831g Millerozyma farinosa GNLVRS01_PISO0J19831g N
NFIA_004700 Neosartorya fischeri CADNFIAG00000040 N
PGUG_00594 Candida guilliermondii PGUG_00594 N
PGUG_00594 Meyerozyma guilliermondii PGUG_00594 N
PGUG_05832 Candida guilliermondii PGUG_05832 I
PGUG_05832 Meyerozyma guilliermondii PGUG_05832 I
PV06_04157 Exophiala oligosperma PV06_04157 N
PV07_01614 Cladophialophora immunda PV07_01614 I
PV09_05539 Verruconis gallopava PV09_05539 N
PVAR5_1869 Byssochlamys spectabilis PVAR5_1869 N
PVAR5_2678 Byssochlamys spectabilis PVAR5_2678 N
UCREL1_7241 Eutypa lata UCREL1_7241 N
V565_050950 Rhizoctonia solani V565_050950 N
V565_080510 Rhizoctonia solani V565_080510 N
Z517_09549 Fonsecaea pedrosoi Z517_09549 N
Z518_00888 Rhinocladiella mackenziei Z518_00888 N
ZBAI_02843 Zygosaccharomyces bailii ZBAI_02843 I
ZBAI_09101 Zygosaccharomyces bailii ZBAI_09101 I