GRMZM2G118250 (Zea mays)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 GRMZM2G118250 T245282_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD6
M06955_2.00 		Arabidopsis thaliana
CGSCGGNDDHDRCGGMGRHDN
NHDYCKCCGYHDHHNCCGSCG		 Dap-seq
OMalley et al.(2016)
AS2_col_a 		0.879 0.879
LOB
M06966_2.00 		Arabidopsis thaliana
NVCGGCGGHRRHDRMGGMGGH
DCCKCCKYHDYYDCCGCCGBN		 Dap-seq
OMalley et al.(2016)
LOB_col_a 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G118250_P01 LOB 33 131
GRMZM2G118250_P02 LOB 33 131
GRMZM2G118250_P03 LOB 33 131
GRMZM2G118250_P04 LOB 33 131
GRMZM2G118250_P05 LOB 33 131
GRMZM2G118250_P06 LOB 33 131

Links

Other LOB family TFs
Other Zea mays TFs

255 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29032.m000021 Ricinus communis 29032.m000021 I 0.000
29813.m001479 Ricinus communis 29813.m001479 I 0.000
30169.m006343 Ricinus communis 30169.m006343 I 0.000
AC198937.4_FG005 Zea mays AC198937.4_FG005 I 0.000
AMTR_s00032p00126420 Amborella trichopoda AMTR_s00032p00126420 I 0.000
anac042 Arabidopsis lyrata fgenesh2_kg.4__2460__AT2G43000.1 I 0.000
anac042 Vitis vinifera VIT_12s0028g00860 I 0.000
anac094 Arabidopsis lyrata Al_scaffold_0007_3733 I 0.000
ANAC094 Arabidopsis thaliana AT5G39820 D 0.000
anac094 Vitis vinifera VIT_14s0108g00860 I 0.000
Aquca_002_00586 Aquilegia coerulea Aquca_002_00586 I 0.000
Aquca_006_00295 Aquilegia coerulea Aquca_006_00295 I 0.000
Aquca_026_00367 Aquilegia coerulea Aquca_026_00367 I 0.000
BGIOSGA009044 Oryza indica BGIOSGA009044 I 0.000
BGIOSGA028728 Oryza indica BGIOSGA028728 I 0.000
Bo3g036290 Brassica oleracea Bo3g036290 I 0.000
Bo4g192870 Brassica oleracea Bo4g192870 I 0.000
Bo6g064260 Brassica oleracea Bo6g064260 I 0.000
Bo8g076410 Brassica oleracea Bo8g076410 I 0.000
Bostr.10058s0013 Boechera stricta Bostr.10058s0013 I 0.000
Bostr.25993s0479 Boechera stricta Bostr.25993s0479 I 0.000
Bra000282 Brassica rapa Bra000282 I 0.000
Bra004736 Brassica rapa Bra004736 I 0.000
Bra028441 Brassica rapa Bra028441 I 0.000
Bra037743 Brassica rapa Bra037743 I 0.000
BRADI1G58057 Brachypodium distachyon BRADI1G58057 I 0.000
BRADI3G37067 Brachypodium distachyon BRADI3G37067 I 0.000
BRADI3G59380 Brachypodium distachyon BRADI3G59380 I 0.000
BRADI4G30177 Brachypodium distachyon BRADI4G30177 I 0.000
Cagra.0202s0012 Capsella grandiflora Cagra.0202s0012 I 0.000
Cagra.5905s0003 Capsella grandiflora Cagra.5905s0003 I 0.000
Carubv10006906m.g Capsella rubella Carubv10006906m.g I 0.000
Carubv10023730m.g Capsella rubella Carubv10023730m.g I 0.000
cassava20477.m1 Manihot esculenta cassava20477.m1 I 0.000
cassava21730.m1 Manihot esculenta cassava21730.m1 I 0.000
cassava34069.m1 Manihot esculenta cassava34069.m1 I 0.000
cassava38350.m1 Manihot esculenta cassava38350.m1 I 0.000
cassava39074.m1 Manihot esculenta cassava39074.m1 I 0.000
cassava45330.m1 Manihot esculenta cassava45330.m1 I 0.000
Ca_15236 Cicer arietinum Ca_15236 I 0.000
Ca_18749 Cicer arietinum Ca_18749 I 0.000
Ca_26322 Cicer arietinum Ca_26322 I 0.000
chr2.LjT04L10.100.nc Lotus japonicus chr2.LjT04L10.100.nc I 0.000
chr3.CM0176.150.nc Lotus japonicus chr3.CM0176.150.nc I 0.000
Ciclev10005465m.g Citrus clementina Ciclev10005465m.g I 0.000
Ciclev10006695m.g Citrus clementina Ciclev10006695m.g I 0.000
Ciclev10011891m.g Citrus clementina Ciclev10011891m.g I 0.000
Ciclev10031623m.g Citrus clementina Ciclev10031623m.g I 0.000
Ciclev10032203m.g Citrus clementina Ciclev10032203m.g I 0.000
Cla005599 Citrullus lanatus Cla005599 I 0.000
Cla013684 Citrullus lanatus Cla013684 I 0.000
CM1835.10.nc Lotus japonicus CM1835.10.nc I 0.000
Cucsa.118320 Cucumis sativus Cucsa.118320 I 0.000
Cucsa.118340 Cucumis sativus Cucsa.118340 N 0.000
Cucsa.285120 Cucumis sativus Cucsa.285120 I 0.000
Eucgr.F01463 Eucalyptus grandis Eucgr.F01463 I 0.000
Eucgr.I01940 Eucalyptus grandis Eucgr.I01940 I 0.000
evm.TU.supercontig_128.20 Carica papaya evm.TU.supercontig_128.20 I 0.000
F775_04018 Aegilops tauschii F775_04018 I 0.000
gene03833-v1.0-hybrid Fragaria vesca gene03833-v1.0-hybrid I 0.000
gene30051-v1.0-hybrid Fragaria vesca gene30051-v1.0-hybrid N 0.000
GLYMA01G05680 Glycine max GLYMA01G05680 I 0.000
GLYMA02G11900 Glycine max GLYMA02G11900 I 0.000
GLYMA02G45371 Glycine max GLYMA02G45371 I 0.000
GLYMA08G41260 Glycine max GLYMA08G41260 I 0.000
GLYMA13G05350 Glycine max GLYMA13G05350 I 0.000
GLYMA14G03441 Glycine max GLYMA14G03441 I 0.000
GLYMA15G40950 Glycine max GLYMA15G40950 I 0.000
GLYMA18G13574 Glycine max GLYMA18G13574 I 0.000
GLYMA18G15020 Glycine max GLYMA18G15020 I 0.000
GLYMA19G02580 Glycine max GLYMA19G02580 I 0.000
Gorai.001G091900 Gossypium raimondii Gorai.001G091900 I 0.000
Gorai.002G036700 Gossypium raimondii Gorai.002G036700 I 0.000
Gorai.004G270300 Gossypium raimondii Gorai.004G270300 I 0.000
Gorai.004G270400 Gossypium raimondii Gorai.004G270400 I 0.000
Gorai.005G141200 Gossypium raimondii Gorai.005G141200 I 0.000
Gorai.006G017700 Gossypium raimondii Gorai.006G017700 I 0.000
Gorai.009G357700 Gossypium raimondii Gorai.009G357700 I 0.000
GRMZM2G100593 Zea mays GRMZM2G100593 I 0.000
GRMZM2G152543 Zea mays GRMZM2G152543 I 0.000
GRMZM2G159094 Zea mays GRMZM2G159094 I 0.000
GSMUA_Achr6G02680_001 Musa acuminata GSMUA_Achr6G02680_001 I 0.000
GSMUA_Achr7G00860_001 Musa acuminata GSMUA_Achr7G00860_001 I 0.000
JUB1 Arabidopsis thaliana AT2G43000 D 0.000
LjT46I09.50.nd Lotus japonicus LjT46I09.50.nd I 0.000
LPERR02G26510 Leersia perrieri LPERR02G26510 I 0.000
LPERR03G30390 Leersia perrieri LPERR03G30390 I 0.000
LPERR08G13170 Leersia perrieri LPERR08G13170 I 0.000
Lus10007263.g Linum usitatissimum Lus10007263.g I 0.000
Lus10015367.g Linum usitatissimum Lus10015367.g I 0.000
Lus10031189.g Linum usitatissimum Lus10031189.g I 0.000
Lus10031767.g Linum usitatissimum Lus10031767.g I 0.000
Lus10036749.g Linum usitatissimum Lus10036749.g I 0.000
Lus10037178.g Linum usitatissimum Lus10037178.g I 0.000
MDP0000216714 Malus domestica MDP0000216714 I 0.000
MDP0000428265 Malus domestica MDP0000428265 I 0.000
mgf023960m Mimulus guttatus mgf023960m I 0.000
mgf025649m Mimulus guttatus mgf025649m I 0.000
mgf026196m Mimulus guttatus mgf026196m I 0.000
MTR_5g040420 Medicago truncatula MTR_5g040420 I 0.000
MTR_5g090970 Medicago truncatula MTR_5g090970 I 0.000
MTR_6g011860 Medicago truncatula MTR_6g011860 I 0.000
MTR_8g467490 Medicago truncatula MTR_8g467490 I 0.000
OB02G39340 Oryza brachyantha OB02G39340 I 0.000
OB03G42970 Oryza brachyantha OB03G42970 I 0.000
OB08G23420 Oryza brachyantha OB08G23420 I 0.000
OBART02G32360 Oryza barthii OBART02G32360 I 0.000
OBART08G15880 Oryza barthii OBART08G15880 I 0.000
OGLUM02G33000 Oryza glumaepatula OGLUM02G33000 I 0.000
OGLUM08G16650 Oryza glumaepatula OGLUM08G16650 I 0.000
OLONG_016322 Oryza longistaminata OLONG_016322 I 0.000
OMERI02G31030 Oryza meridionalis OMERI02G31030 I 0.000
OMERI08G13180 Oryza meridionalis OMERI08G13180 I 0.000
ONIVA06G04660 Oryza nivara ONIVA06G04660 I 0.000
ONIVA08G17120 Oryza nivara ONIVA08G17120 I 0.000
OPUNC02G29910 Oryza punctata OPUNC02G29910 I 0.000
OPUNC08G13940 Oryza punctata OPUNC08G13940 I 0.000
orange1.1g015827m.g Citrus sinensis orange1.1g015827m.g I 0.000
orange1.1g021785m.g Citrus sinensis orange1.1g021785m.g I 0.000
orange1.1g046948m.g Citrus sinensis orange1.1g046948m.g I 0.000
ORGLA02G0278900 Oryza glaberrima ORGLA02G0278900 I 0.000
ORUFI02G34050 Oryza rufipogon ORUFI02G34050 I 0.000
ORUFI08G17800 Oryza rufipogon ORUFI08G17800 I 0.000
OS02G0745250 Oryza sativa OS02G0745250 I 0.000
OS08G0436700 Oryza sativa OS08G0436700 I 0.000
Pavir.Aa00706 Panicum virgatum Pavir.Aa00706 I 0.000
Pavir.Ab02998 Panicum virgatum Pavir.Ab02998 I 0.000
Pavir.Bb02181 Panicum virgatum Pavir.Bb02181 I 0.000
Pavir.Fa00893 Panicum virgatum Pavir.Fa00893 I 0.000
Pavir.J03639 Panicum virgatum Pavir.J03639 I 0.000
Pavir.J08304 Panicum virgatum Pavir.J08304 I 0.000
Pavir.J26531 Panicum virgatum Pavir.J26531 I 0.000
PGSC0003DMG400001323 Solanum tuberosum PGSC0003DMG400001323 I 0.000
PGSC0003DMG400021119 Solanum tuberosum PGSC0003DMG400021119 I 0.000
PGSC0003DMG400031266 Solanum tuberosum PGSC0003DMG400031266 I 0.000
PK01104.1 Cannabis sativa PK01104.1 I 0.000
Pm011037 Prunus mume Pm011037 I 0.000
Pm014764 Prunus mume Pm014764 I 0.000
Pm015876 Prunus mume Pm015876 I 0.000
POPTR_0001s11660 Populus trichocarpa POPTR_0001s11660 I 0.000
POPTR_0002s05820 Populus trichocarpa POPTR_0002s05820 I 0.000
POPTR_0004s12850 Populus trichocarpa POPTR_0004s12850 I 0.000
POPTR_0005s10080 Populus trichocarpa POPTR_0005s10080 I 0.000
POPTR_0005s22710 Populus trichocarpa POPTR_0005s22710 I 0.000
POPTR_0007s08340 Populus trichocarpa POPTR_0007s08340 I 0.000
POPTR_0017s11830 Populus trichocarpa POPTR_0017s11830 I 0.000
PRUPE_ppa016710mg Prunus persica PRUPE_ppa016710mg I 0.000
PRUPE_ppa022043mg Prunus persica PRUPE_ppa022043mg I 0.000
PRUPE_ppa026843mg Prunus persica PRUPE_ppa026843mg I 0.000
SapurV1A.0085s0430 Salix purpurea SapurV1A.0085s0430 I 0.000
SapurV1A.0094s0540 Salix purpurea SapurV1A.0094s0540 I 0.000
SapurV1A.0354s0230 Salix purpurea SapurV1A.0354s0230 I 0.000
SapurV1A.0552s0060 Salix purpurea SapurV1A.0552s0060 I 0.000
Sb02g024593 Sorghum bicolor Sb02g024593 I 0.000
Sb04g028015 Sorghum bicolor Sb04g028015 I 0.000
Sb07g021400 Sorghum bicolor Sb07g021400 I 0.000
Si015514m.g Setaria italica Si015514m.g I 0.000
Si019308m.g Setaria italica Si019308m.g I 0.000
Si030477m.g Setaria italica Si030477m.g N 0.000
Si032144m.g Setaria italica Si032144m.g I 0.000
Si036447m.g Setaria italica Si036447m.g I 0.000
Solyc02g069960.2 Solanum lycopersicum Solyc02g069960.2 I 0.000
Solyc02g087920.2 Solanum lycopersicum Solyc02g087920.2 I 0.000
Solyc05g007550.1 Solanum lycopersicum Solyc05g007550.1 I 0.000
Solyc07g045030.2 Solanum lycopersicum Solyc07g045030.2 I 0.000
TCM_001955 Theobroma cacao TCM_001955 I 0.000
TCM_018508 Theobroma cacao TCM_018508 I 0.000
TCM_032389 Theobroma cacao TCM_032389 N 0.000
TCM_032393 Theobroma cacao TCM_032393 I 0.000
Thhalv10027860m.g Eutrema salsugineum Thhalv10027860m.g I 0.000
Traes_5AL_F2A49EB8E Triticum aestivum Traes_5AL_F2A49EB8E I 0.000
Traes_5AL_F35B9FF8E Triticum aestivum Traes_5AL_F35B9FF8E I 0.000
Traes_5BL_2131D2B17 Triticum aestivum Traes_5BL_2131D2B17 I 0.000
Traes_5BL_38DFDFE41 Triticum aestivum Traes_5BL_38DFDFE41 I 0.000
Traes_5DL_0713E8429 Triticum aestivum Traes_5DL_0713E8429 I 0.000
Traes_6AL_0D7866801 Triticum aestivum Traes_6AL_0D7866801 I 0.000
Traes_6BL_A169A3ECB Triticum aestivum Traes_6BL_A169A3ECB I 0.000
Traes_6DL_DA233B945 Triticum aestivum Traes_6DL_DA233B945 I 0.000
TRIUR3_01901 Triticum urartu TRIUR3_01901 I 0.000
TRIUR3_04784 Triticum urartu TRIUR3_04784 I 0.000
VIT_01s0026g02360 Vitis vinifera VIT_01s0026g02360 I 0.000
VIT_19s0027g00860 Vitis vinifera VIT_19s0027g00860 I 0.000
VIT_19s0027g00870 Vitis vinifera VIT_19s0027g00870 I 0.000
VIT_19s0027g00880 Vitis vinifera VIT_19s0027g00880 I 0.000