Pavir.Ea01295 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.Ea01295 T247193_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea01295.1.p LOB 4 109

Links

Other LOB family TFs
Other Panicum virgatum TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29650.m000275 Ricinus communis 29650.m000275 N
AMTR_s00022p00160350 Amborella trichopoda AMTR_s00022p00160350 I
AMTR_s00067p00064350 Amborella trichopoda AMTR_s00067p00064350 N
anac032 Vitis vinifera VIT_18s0001g02300 I
Aquca_014_00255 Aquilegia coerulea Aquca_014_00255 I
ATAF1 Arabidopsis lyrata scaffold_100066.1 I
BGIOSGA007201 Oryza indica BGIOSGA007201 N
Bo3g065240 Brassica oleracea Bo3g065240 N
Bo5g001100 Brassica oleracea Bo5g001100 I
Bo5g132990 Brassica oleracea Bo5g132990 N
Bostr.5325s0094 Boechera stricta Bostr.5325s0094 I
Bra001480 Brassica rapa Bra001480 N
Bra033239 Brassica rapa Bra033239 I
Bra034713 Brassica rapa Bra034713 N
Cagra.1968s0112 Capsella grandiflora Cagra.1968s0112 I
Carubv10009926m.g Capsella rubella Carubv10009926m.g I
cassava28909.valid.m1 Manihot esculenta cassava28909.valid.m1 I
Cla023574 Citrullus lanatus Cla023574 N
evm.TU.supercontig_165.12 Carica papaya evm.TU.supercontig_165.12 N
e_gw1.117.35.1 Physcomitrella patens e_gw1.117.35.1 I
e_gw1.140.53.1 Physcomitrella patens e_gw1.140.53.1 I
e_gw1.164.18.1 Physcomitrella patens e_gw1.164.18.1 I
e_gw1.164.26.1 Physcomitrella patens e_gw1.164.26.1 I
e_gw1.259.4.1 Physcomitrella patens e_gw1.259.4.1 I
e_gw1.5.134.1 Physcomitrella patens e_gw1.5.134.1 I
fgenesh1_pg.scaffold_182000024 Physcomitrella patens fgenesh1_pg.scaffold_182000024 I
gene10469-v1.0-hybrid Fragaria vesca gene10469-v1.0-hybrid N
GLYMA08G18470 Glycine max GLYMA08G18470 N
GLYMA14G24220 Glycine max GLYMA14G24220 I
Gorai.005G088800 Gossypium raimondii Gorai.005G088800 I
Gorai.010G051900 Gossypium raimondii Gorai.010G051900 I
GRMZM2G079632 Zea mays GRMZM2G079632 I
GRMZM2G162739 Zea mays GRMZM2G162739 I
GSMUA_Achr11G22760_001 Musa acuminata GSMUA_Achr11G22760_001 N
GSMUA_Achr4G02390_001 Musa acuminata GSMUA_Achr4G02390_001 I
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I
GSMUA_Achr6G36550_001 Musa acuminata GSMUA_Achr6G36550_001 N
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I
gw1.1.690.1 Physcomitrella patens gw1.1.690.1 I
gw1.6.394.1 Physcomitrella patens gw1.6.394.1 I
LPERR02G20100 Leersia perrieri LPERR02G20100 N
LPERR07G06440 Leersia perrieri LPERR07G06440 I
Lus10015389.g Linum usitatissimum Lus10015389.g I
mgf013201m Mimulus guttatus mgf013201m I
NAC002 Arabidopsis thaliana AT1G01720 D
OB02G31950 Oryza brachyantha OB02G31950 N
OB03G10720 Oryza brachyantha OB03G10720 N
OBART02G24560 Oryza barthii OBART02G24560 N
OBART03G00700 Oryza barthii OBART03G00700 I
OGLUM02G24950 Oryza glumaepatula OGLUM02G24950 N
OGLUM03G00640 Oryza glumaepatula OGLUM03G00640 I
OLONG_000596 Oryza longistaminata OLONG_000596 N
OLONG_025732 Oryza longistaminata OLONG_025732 I
OMERI02G24100 Oryza meridionalis OMERI02G24100 N
OMERI03G00460 Oryza meridionalis OMERI03G00460 N
ONIVA02G26880 Oryza nivara ONIVA02G26880 N
ONIVA11G21150 Oryza nivara ONIVA11G21150 N
OPUNC03G00610 Oryza punctata OPUNC03G00610 N
ORGLA03G0005100 Oryza glaberrima ORGLA03G0005100 I
ORUFI02G25930 Oryza rufipogon ORUFI02G25930 N
ORUFI03G00490 Oryza rufipogon ORUFI03G00490 N
OS03G0109000 Oryza sativa OS03G0109000 N
Pavir.Ea03621 Panicum virgatum Pavir.Ea03621 I
PGSC0003DMG400022134 Solanum tuberosum PGSC0003DMG400022134 N
PK23481.1 Cannabis sativa PK23481.1 N
PK26157.1 Cannabis sativa PK26157.1 I
PRUPE_ppa008801mg Prunus persica PRUPE_ppa008801mg N
SapurV1A.0085s0410 Salix purpurea SapurV1A.0085s0410 N
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I
SapurV1A.0365s0200 Salix purpurea SapurV1A.0365s0200 I
SapurV1A.0740s0040 Salix purpurea SapurV1A.0740s0040 I
SapurV1A.3767s0010 Salix purpurea SapurV1A.3767s0010 I
Sb02g006680 Sorghum bicolor Sb02g006680 I
Sb10g027100 Sorghum bicolor Sb10g027100 N
Solyc04g009440.2 Solanum lycopersicum Solyc04g009440.2 I
Solyc11g017470.1 Solanum lycopersicum Solyc11g017470.1 I
TCM_035160 Theobroma cacao TCM_035160 I
Thhalv10021297m.g Eutrema salsugineum Thhalv10021297m.g N
VIT_06s0004g00020 Vitis vinifera VIT_06s0004g00020 I